BAC Information

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BAC

Clone NameMSMg01-199M17
Chromosome13 (Build37)
Map Location 109,790,492 - 109,937,364
singlet/doubletdoublet
Overlap genePde4d, LOC100040968
Upstream gene3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040577, Rab3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199M17.T7 (MSMg01no199_m17.b1)MSMg01-199M17.TJ (MSMg01no199_m17.g1)
ACCAG386597AG386598
length729751
length of high quality
(start - end)		291 (435 - 725)568 (75 - 642)
definitionCHROMAT_FILE: MSMg01no199_m17.b1 PHD_FILE: MSMg01no199_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:29 2005CHROMAT_FILE: MSMg01no199_m17.g1 PHD_FILE: MSMg01no199_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,790,492 - 109,790,782)(109,936,797 - 109,937,364)
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTGTTCCTCTGAGACTTCAGGTTGTTTTTTTTTTTAAATAAG
GCCTCAATTATTTAATGTATGACAGCCACATGATGGAATTTAGTCTGTTG
TTACTTAAGCCTACTCACATAATCTTAATTCTATCTAAAGGATATGATCA
CTGCAGCATCCAGATTTATTTGACCAAATGTGTGTATGCTTTGTCATACA
CAGACTGACACACGTAATGAACTATGACATGCTCACATGGGTTCTCTCAT
CCAGCTGTTCAGTCAAAGCTTCTGTACAGGGCGACCGCTGGTTTACTAGG
GAGAAGAAATATCTTGTTTTCTTGCGCCCCCCCATTCGGGATGCCATTAT
TGCAATATCTACTGGTCACAAGAAGTCATGCTTGACTGTTGACAGTTGTA
GACCAGAAACCATCGCACTCCTCCCTCTGGTCACAGTGAATCATGTTCCT
CTCCCTAGCATGCTATCAGGTTGTAGCTGTAAACTTATGTTCAACATTTA
TAAAACAGTAGAATTTGCTATGGCTTTTCCAAAAGACTTCGATGAGATTT
CCCTCTTTCCACCTCATCTTCCACACATCCATCTGGAAAAATATGTCCAT
GTGTGCAATAGTGACATCAACTTTATAATGGCAAGAAACAGCTTTCTGGT
TGGATTCAAGACCCACTCCATAGGAGATN

NTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTACCACAGACCGTGCTCTGGGCTTG
AATGTGTTATTTTGGGTAGTATTATTTCCTGTATAGCTCCACGGGAATAG
CAAATCCAGCAGACTGGCAGGACTTTTCACCCTCGGGTGCCCAGAGAGCT
TGCCCTATAGATAATCACTGCAGCTGTGCCTTCTGGGGATGGTTCCTTGG
CTCCAGGGGAAAGGTAGAGACAGCAGGTAGTACTTGATGTTACAGACTGA
TACTTGACCTCACTTACCATGTCCTCTTGTAGACCTACTCAGAGCTGGCA
TGCCTGTTCTCCAGGGCTGTCAGGCTAAGCACAGCAACAAATGTTCTGTT
TTAGTGACTAGCGACCTAGCCACTCCCATTTCAAGGTCATTTAACCACTC
TATTTAGGGGTAGGATGAGCCAAGAGTAATAACAACCTTGTTATCAGAAA
AGGGTAGCGAGCTGCAACTTCTGTGAGATAGGCTAGTATTGTCTGCATTT
CTTTCTGAAAGGTGAGTTTGTAAGATATACCAGAAAGGAAGGGGAATATC
TGATGCCTAAACAAGGTGTTGCTTAAACCTAAAGGAAGCAACGTAACTGC
AAAACATGTTTTATGGATCTTCAGTAGAAAAAAGGGGAAAAAAAATCACG
GTGAATTTAACTTGAAAACGTTTTGTTTGTCGCTGTTCTTAAAAAATACC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_m17.b1 MSMg01no199_m17.b1 CHROMAT_FILE:
MSMg01no199_m17.b1 PHD_FILE: MSMg01no199_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:29 2005
         (291 letters)



>mm_chr13_109790292_109790982
          Length = 691

 Score =  516 bits (267), Expect = e-151
 Identities = 285/291 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgttgacagttgtagaccagaaaccatcgcactcctccctctggtcacagtgaatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgttgacagttgtagaccagaaaccatcgcactcctccctctggtcacagtgaatcat 260

                                                                       
Query: 61  gttcctctccctagcatgctatcaggttgtagctgtaaacttatgttcaacatttataaa 120
           ||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 261 gttcctctccctagcgtgctatcaggttgtagctataaactcatgttcaacatttataaa 320

                                                                       
Query: 121 acagtagaatttgctatggcttttccaaaagacttcgatgagatttccctctttccacct 180
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 321 acagtagaatttactatggcttttccaaaagtcttcgatgagatttccctcttcccacct 380

                                                                       
Query: 181 catcttccacacatccatctggaaaaatatgtccatgtgtgcaatagtgacatcaacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcttccacacatccatctggaaaaatatgtccatgtgtgcaatagtgacatcaacttt 440

                                                              
Query: 241 ataatggcaagaaacagctttctggttggattcaagacccactccatagga 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataatggcaagaaacagctttctggttggattcaagacccactccatagga 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no199_m17.g1 MSMg01no199_m17.g1 CHROMAT_FILE:
MSMg01no199_m17.g1 PHD_FILE: MSMg01no199_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:29 2005
         (568 letters)



>mm_chr13_109936597_109937564
          Length = 968

 Score = 1029 bits (532), Expect = 0.0
 Identities = 559/568 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaccacagaccgtgctctgggcttgaatgtgttattttgggtagtattatttcctgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttaccacagaccgtgctctgggcttgaatgtgttattttgggtagtattatttcctgtat 709

                                                                       
Query: 61  agctccacgggaatagcaaatccagcagactggcaggacttttcaccctcgggtgcccag 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 708 agctccacgggaatagcaaatccggcagactggcaggacttttcaccctcgggtgcccag 649

                                                                       
Query: 121 agagcttgccctatagataatcactgcagctgtgccttctggggatggttccttggctcc 180
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agagcttgccttatggataatcactgcagctgtgccttctggggatggttccttggctcc 589

                                                                       
Query: 181 aggggaaaggtagagacagcaggtagtacttgatgttacagactgatacttgacctcact 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 588 aggggaaaggtagagacagcaggtagtacttgatgttacagactgatacttgacctcatt 529

                                                                       
Query: 241 taccatgtcctcttgtagacctactcagagctggcatgcctgttctccagggctgtcagg 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 528 taccatgtcctcttgtagacctactcagagctggcatgccagttctccagggctgtcagg 469

                                                                       
Query: 301 ctaagcacagcaacaaatgttctgttttagtgactagcgacctagccactcccatttcaa 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 468 ctaagcacagcaacaaatgttctgttttagtgactagcgatctagccactcccatttcaa 409

                                                                       
Query: 361 ggtcatttaaccactctatttaggggtaggatgagccaagagtaataacaaccttgttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggtcatttaaccactctatttaggggtaggatgagccaagagtaataacaaccttgttat 349

                                                                       
Query: 421 cagaaaagggtagcgagctgcaacttctgtgagataggctagtattgtctgcatttcttt 480
           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 348 cagaaaagggtagtgagctgcaacttctgtgagataggctagtattctctgcatttcttt 289

                                                                       
Query: 481 ctgaaaggtgagtttgtaagatataccagaaaggaaggggaatatctgatgcctaaacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 288 ctgaaaggtgagtttgtaagatataccagaaaggaaggggaatatttgatgcctaaacaa 229

                                       
Query: 541 ggtgttgcttaaacctaaaggaagcaac 568
           ||||||||||||||||||||||||||||
Sbjct: 228 ggtgttgcttaaacctaaaggaagcaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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