BAC Information

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BAC

Clone NameMSMg01-199O18
Chromosome13 (Build37)
Map Location 99,960,329 - 100,085,544
singlet/doubletdoublet
Overlap geneZfp366
Upstream geneRgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797
Downstream genePtcd2, Mrps27, Mtap1b, Cartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199O18.T7 (MSMg01no199_o18.b1)MSMg01-199O18.TJ (MSMg01no199_o18.g1)
ACCAG386672AG386673
length795753
length of high quality
(start - end)		260 (49 - 308)442 (83 - 524)
definitionCHROMAT_FILE: MSMg01no199_o18.b1 PHD_FILE: MSMg01no199_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:39 2005CHROMAT_FILE: MSMg01no199_o18.g1 PHD_FILE: MSMg01no199_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,960,329 - 99,960,584)(100,085,103 - 100,085,544)
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCTAGTGTCCTCTCTTCTCTAGAAATTTCCAGAACACGGAC
AAGCCCGGCTGTCAGACCAATGTCTCAGGGATTCTGTGTCGATCATCAGA
GCCAAAGGGGAGATGCCAGGACACATACCTCACTCCCCTCATCTAGAAAA
GTCTGCGGAAAGAATCCTTAGAGTTTCCTTTTTGCTGGGGACTCACCGTT
CTCTCCCAGAACAGAAGTCAAGAAGGGGCTATTGTTGGAGGGGTGGGGAA
AGGAAGCGGNGNANNGAGNNNTTTTTTTTTTAGGAAGAGACTCTGCTCGA
TGCAGCGGTTACTTTTTATTGCCTCCGCCCGCCGCAAGTCATTGCCTTCT
TTTTTTTTCCGTTTTTCCCCCCCCCCCCTTCGCCCTTCCTATCGTCTTTC
ATTCTTTTCCTTTTACTCTATTCCCCCTTCCTAACTTTCCTCTCTAATTT
TCCCCTTCTTTTTCCCTTTACCTTCCTACCTCCATTTACTTTCTTTCCCC
CCCCTCTTTTTTTTTTCTCGCTACACTTATTTCTTCTCCCCCTTCTCCCT
TTTCTATTTTTTATTTTATCTCTTTCCTATTTCCCCCTCCTTTATCCCCC
TTTCCTATTATTTTATTTATTTTTTCCCCTACCTTTTTTGTTCATCTTTT
CTTCCCTTTTCACCACCTTGTCCACCCCCTTTTTAAATCCTTATTTTCCA
CGTTTTTCCCTTATTCACTCTACCTTTTTTCTCTTCCCCTATCCN

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGGCCATAGATGTAG
CCCGGAGGTGCAAAGCTTATATAGAGAGAGTACTCAGGTCTGCATTTATT
TGTCTTTTATGTATTTTGAGGCAGGGTCTTGCTGGGTAGACCATACTGGC
TAGCAACCCGCTCTGCAGCCCACGCTGGCCTCTCTCATTCATGATCCTCC
TGCCTCAGCCTTTTAAAAGTCTCTTTTCTCCAAGTGTTTCAGTGTCTGCA
TATGGACACAACCTTCAAGTTTCACTGAAATCTTCTTGTGCGGAACCTTT
GTAGAGCTGTGGAGGATGGGATCCAAAGAAGACATTGCTGTCTTCACAGT
GCCAATTCCCTCCATGGTGGTGGCCCTAAATCAGCAGGTGATGCGAGCTC
CCTTGTCTTTGAGTTGGAGGGTTCGCTGTAACAAGGCAGTCTAAAGCAGG
TCAGGTGCATCACTTTCCTGTTCTGGGCCAGTTGAATGCGCTCTGTGAAT
TCTTCTGACTTCTGTATTCAACTTCCTCTTTCTCCTCTCCCTGTCTTCTC
GTCATTCTGATTGTGCCTCCCCCTTTGCCTTTTGCTTGCCCATGCTTCTT
TACCATCCCTCCCCTTTTCCCCTTCTTTCCCATTTTCACCCATTTTACCC
CACTTATACAATTTACCACCATTTACTTCACCTCCTTCTGTTCACGTTCT
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_o18.b1 MSMg01no199_o18.b1 CHROMAT_FILE:
MSMg01no199_o18.b1 PHD_FILE: MSMg01no199_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:39 2005
         (260 letters)



>mm_chr13_99960125_99960784
          Length = 660

 Score =  487 bits (252), Expect = e-142
 Identities = 255/256 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctagtgtcctctcttctctagaaatttccagaacacggacaagcccggctgt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctagtgtcttctcttctctagaaatttccagaacacggacaagcccggctgt 264

                                                                       
Query: 65  cagaccaatgtctcagggattctgtgtcgatcatcagagccaaaggggagatgccaggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagaccaatgtctcagggattctgtgtcgatcatcagagccaaaggggagatgccaggac 324

                                                                       
Query: 125 acatacctcactcccctcatctagaaaagtctgcggaaagaatccttagagtttcctttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatacctcactcccctcatctagaaaagtctgcggaaagaatccttagagtttcctttt 384

                                                                       
Query: 185 tgctggggactcaccgttctctcccagaacagaagtcaagaaggggctattgttggaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctggggactcaccgttctctcccagaacagaagtcaagaaggggctattgttggaggg 444

                           
Query: 245 gtggggaaaggaagcg 260
           ||||||||||||||||
Sbjct: 445 gtggggaaaggaagcg 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no199_o18.g1 MSMg01no199_o18.g1 CHROMAT_FILE:
MSMg01no199_o18.g1 PHD_FILE: MSMg01no199_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:39 2005
         (442 letters)



>mm_chr13_100084724_100085565
          Length = 842

 Score =  777 bits (402), Expect = 0.0
 Identities = 432/442 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgggccatagatgtagcccggaggtgcaaagcttatatagagagagtactcaggtctg 60
           |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 821 agtgggccatagatgtagcccggaggtgcaaaacttatatagagagaatactcaggtctg 762

                                                                       
Query: 61  catttatttgtcttttatgtattttgaggcagggtcttgctgggtagaccatactggcta 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 catttatttgtcttttacgtattttgaggcagggtcttgctgggtagaccatactggcta 702

                                                                       
Query: 121 gcaacccgctctgcagcccacgctggcctctctcattcatgatcctcctgcctcagcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gcaacccgctctgcagcccacgctggcctctctcattcatgatcctcctgcctcagcctt 642

                                                                       
Query: 181 ttaaaagtctcttttctccaagtgtttcagtgtctgcatatggacacaaccttcaagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttaaaagtctcttttctccaagtgtttcagtgtctgcatatggacacaaccttcaagttt 582

                                                                       
Query: 241 cactgaaatcttcttgtgcggaacctttgtagagctgtggaggatgggatccaaagaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cactgaaatcttcttgtgcggaacctttgtagagctgtggaggatgggatccaaagaaga 522

                                                                       
Query: 301 cattgctgtcttcacagtgccaattccctccatggtggtggccctaaatcagcaggtgat 360
           | ||||| ||||||||| |||||||||||||||||||||||  |||||||||||||||||
Sbjct: 521 cgttgctatcttcacagggccaattccctccatggtggtgggtctaaatcagcaggtgat 462

                                                                       
Query: 361 gcgagctcccttgtctttgagttggagggttcgctgtaacaaggcagtctaaagcaggtc 420
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 461 gcgagctcccttgtctttgagttggagggttcactgtaacaaggcagtttaaagcaggtc 402

                                 
Query: 421 aggtgcatcactttcctgttct 442
           ||||||||||||||||||||||
Sbjct: 401 aggtgcatcactttcctgttct 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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