BAC Information

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BAC

Clone NameMSMg01-201N03
Chromosome13 (Build37)
Map Location 96,367,394 - 96,519,789
singlet/doubletdoublet
Overlap geneF2r, Iqgap2, F2rl2
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1
Downstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201N03.T7 (MSMg01no201_n03.b1)MSMg01-201N03.TJ (MSMg01no201_n03.g1)
ACCAG387216AG387217
length722731
length of high quality
(start - end)
550 (70 - 619)424 (77 - 500)
definitionCHROMAT_FILE: MSMg01no201_n03.b1 PHD_FILE: MSMg01no201_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:20 2005CHROMAT_FILE: MSMg01no201_n03.g1 PHD_FILE: MSMg01no201_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,519,411 - 96,519,789)(96,367,394 - 96,367,817)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAATATAGCCACGGAGCGCAGCTACAAAACACACGATTGAAAGT
GTGTCTAAATTAAACAAGGGTAGAACCGGCTTCAGCTGATAGTGAATTTA
AGGTAGTCGGCTCCTTGGGGTACATTTTCTGTAAATTATTATAATTTAAC
TTTTGAAGTTTATTTTATGTGTCCGTGCATCCAGACAGACGGGCCAGGGT
GTGTGGAGGCCAAAGAACCACTTTCAGAGTCAGTTCTCAATTTCCAAGCT
TTGAAGCAAGGCCTCTCGTCTTCGCTTGCGAATTCCAGGCTAGCAGGCCT
ATGGACTTCCAGGCAGTTCTCTGTCTCCTCTTCCCACCTCATCATCAGAG
TCCTGGGATTACAGCTGCACCCCACAGCATCTGGCTTTCTCTGTGGTTTC
TGGGGATCAAACTCTGGTCATCGGGCGTGCGGATGTGGTATTCTTTCCTG
CTGAGCCATCTCCTTGGCCCACATTTTTTATTTTATAATTATTATTATAA
ATCATGGTCTCATTTTGAATCTGAAAGGTTAGAGGCTTGTAGCTCTTACT
CCTAAAATAGATCTACCAAATAAAATTCAATCAGCAAGCATTCAGCACTT
GGTAAATTCAAAGAGAGAACAAATAGGCATTTGGGGGAAATGAGGAAATT
ACCTTTGATGCAAATTGTACGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATACAGTAGACAACTGGCCCTCC
AAACAAGCCAACTTTGCAAAGGCTGCCTCTCTTTTTTTTTTTTTTTTCTC
GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTA
GACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCTTCCCGAGT
GCTGGGGTTAAAGGCGTGCACCACCACGCCCGGCAAAGGCTGGCTCTTAA
GGTCTTGCTACACAGTGCATGGTCCAAAGGGCTGCAACTTTAACATTTCT
TGGAATGCAGTGAGACTTGTACCTCAGACCCAGCCCCAGGCCTACAGCTT
GGCGCCTGCAGCTCCCCACCATTTCCAGATGGCAAAGCGGGGTCCAAACT
TTCTTGACCTTTTTGTAGTGCTGGGAAGTGAGGCCATCACACACTAGGCG
AATGAATCCTCTGCCAGCTCCTGAACATTTTGTTTAAAATGTGTCTATCA
ACTCTGGCTTACCCATTAGACTCCTAGGAGACCGCGACAGTTCTGACTGG
GGCTCCGGCCCAGTTCTCAGGAGGTTCCGACTCTCGGTGTTTGGGTTGAG
CCTCTGTCTTTTATCTGCTATCTTGGACCTCTCTTCTTATATTCCTTCTT
CCCACTACTATCTCACCTTCTTTTTTATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_n03.b1 MSMg01no201_n03.b1 CHROMAT_FILE:
MSMg01no201_n03.b1 PHD_FILE: MSMg01no201_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:20 2005
         (550 letters)



>mm_chr13_96519411_96520360
          Length = 950

 Score =  717 bits (371), Expect = 0.0
 Identities = 377/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagcgcagctacaaaacacacgattgaaagtgtgtctaaattaaacaagggtagaaccgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagcgcagctacaaaacacacgattgaaagtgtgtctaaattaaacaagggtagaaccgg 320

                                                                       
Query: 61  cttcagctgatagtgaatttaaggtagtcggctccttggggtacattttctgtaaattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cttcagctgatagtgaatttaaggtagtcggctccttggggtacattttctgtaaattat 260

                                                                       
Query: 121 tataatttaacttttgaagtttattttatgtgtccgtgcatccagacagacgggccaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tataatttaacttttgaagtttattttatgtgtccgtgcatccagacagacgggccaggg 200

                                                                       
Query: 181 tgtgtggaggccaaagaaccactttcagagtcagttctcaatttccaagctttgaagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgtgtggaggccaaagaaccactttcagagtcagttctcaatttccaagctttgaagcaa 140

                                                                       
Query: 241 ggcctctcgtcttcgcttgcgaattccaggctagcaggcctatggacttccaggcagttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ggcctctcgtcttcgcttgcgaattccaggctagcaggcctatggacttccaggcagttc 80

                                                                       
Query: 301 tctgtctcctcttcccacctcatcatcagagtcctgggattacagctgcaccccacagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 79  tctgtctcctcttcccacctcatcatcagagtcctgggattacagctgcattccacagca 20

                              
Query: 361 tctggctttctctgtggtt 379
           |||||||||||||||||||
Sbjct: 19  tctggctttctctgtggtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no201_n03.g1 MSMg01no201_n03.g1 CHROMAT_FILE:
MSMg01no201_n03.g1 PHD_FILE: MSMg01no201_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:20 2005
         (424 letters)



>mm_chr13_96367194_96368017
          Length = 824

 Score =  781 bits (404), Expect = 0.0
 Identities = 419/424 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacagtagacaactggccctccaaacaagccaactttgcaaaggctgcctctcttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacagtagacaactggccctccaaacaagccaactttgcaaaggctgcctctcttttt 260

                                                                       
Query: 61  tttttttttttctcgagacagggtttctctgtgtagccctggctgtcctggaactcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttttttttctcgagacagggtttctctgtgtagccctggctgtcctggaactcactt 320

                                                                       
Query: 121 tgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcttcccgagtgctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcttcccgagtgctggg 380

                                                                       
Query: 181 gttaaaggcgtgcaccaccacgcccggcaaaggctggctcttaaggtcttgctacacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaaaggcgtgcaccaccacgcccggcaaaggctggctcttaaggtcttgctacacagt 440

                                                                       
Query: 241 gcatggtccaaagggctgcaactttaacatttcttggaatgcagtgagacttgtacctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatggtccaaagggctgcaactttaacatttcttggaatgcagtgagacttgtacctca 500

                                                                       
Query: 301 gacccagccccaggcctacagcttggcgcctgcagctccccaccatttccagatggcaaa 360
           ||||||||||||||||||||||||||||||||||||| |  |  ||||||||||||||||
Sbjct: 501 gacccagccccaggcctacagcttggcgcctgcagcttcaaaagatttccagatggcaaa 560

                                                                       
Query: 361 gcggggtccaaactttcttgacctttttgtagtgctgggaagtgaggccatcacacacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcggggtccaaactttcttgacctttttgtagtgctgggaagtgaggccatcacacacta 620

               
Query: 421 ggcg 424
           ||||
Sbjct: 621 ggcg 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)