BAC Information

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BAC

Clone NameMSMg01-203G10
Chromosome13 (Build37)
Map Location 7,484,207 - 7,484,644
singlet/doubletsinglet
Overlap genenone
Upstream genePitrm1, Pfkp, LOC100039532, LOC667611, EG623516
Downstream geneLOC791083, LOC382722, Adarb2, EG666941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203G10.T7 (MSMg01no203_g10.b1)MSMg01-203G10.TJ (MSMg01no203_g10.g1)
ACCAG388185AG388186
length716713
length of high quality
(start - end)
40 (444 - 483)439 (77 - 515)
definitionCHROMAT_FILE: MSMg01no203_g10.b1 PHD_FILE: MSMg01no203_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:32 2005CHROMAT_FILE: MSMg01no203_g10.g1 PHD_FILE: MSMg01no203_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
AGTCTGAGATTCTCTCTATAANACTGATAATCTTGGACGTGAGTTGACCT
TTCTTCTTACTCATAGTTGACCCCAGAACTGTGGACCTGCTGATGATATT
CATTAGCATTGATCTCTGAAACTCTCAGTATTACTACTTCAGGAAACATG
CATTCTTGAAAGTGAACTGAACTTGCCTCCAATATTTCATGTGATATTTC
TACCTGCCATGTGTGCAACGTACGAATATATCTTTTCTTGATAAGACTAC
TGAACTCAACTGTTCATACGATTGTTTATAGTCGTATAGATTTGTATCCT
AATCACTAGCCTGTATTTGTCCCATATGCTGCTTTTTATTCAAATGTATT
CTATCTGGGATGACCTCACCCCACCCCTGATCATACAGAAAATGCTCTCT
CAGTTGAAACTGAGCTCTTTTTTTATGGATCTTATCCGACTTATGACCAT
AAAATACCTTGATTTCCATGGAAACTTTGCTTCTTAGATGCTGATTCTGG
TGCATCTATTTTAGTGCCTTCCTGGCATCTGAGACCATAAAACTAATATT
TTTTATGAACCGGAGGTACGCTTTCCTCATAATTGTCCTGTTCTTGTTGG
ACCCACCCTCTTTATTTGTCCTACTATGTCTTATTTGTCACACCTTTTCC
ATGCTACCCAGAGTAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAAAGTAAAAAGAAAAAAAG
GTTTACTCAGAGCCAGACACTAACTGGCAGCAGCTCTGAGAAGCCTGAGT
AACCTATGGAAGCTTATAGAGACGACTCAGTGGTGAAGGAGAATATGCAG
AGCCCATAGTATCCCTGGAACAATAACAATAATAACAAATGCAGGATCTA
TGAGAAGATGCTTATAAAAAGTGTACAAACAAAATTGGAATCCATGGCCC
ATGCTGCTGTCCCAGGATGTGTTGAATCTCTAGGTTCATGTGGTTGTCCA
TGGTCTGGGCCACCAATGGAAACCATGTCAATATCTAAGACCTGTGTTAC
CACCAGTAGCCAAATGCACCGCCCCTAGCATATGCTACCAGTGGAGGCCA
TGTTAGAGCCCCTGGTCTGTCCTGCTGCCCGGGAATATGTTGGGGTCTAT
GGTTCTGCTGCAGCTGGTGGCCAAAATGATGTCCATGGCCCATGCATATT
TATTGTATTTGTTGCTGCCTGGGATATGTTGTGTGTGGCTTGTGCTACCA
CCAGAGGTCCACTGCCCCCCAGTCAGTCTAAGGTCTTGACTGTTCCCGTC
TTCATGTTTGTGACCATGCCCCATACTGGCCTGTTGCGCTCTTGATGGTC
TCGCTATTGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_g10.g1 MSMg01no203_g10.g1 CHROMAT_FILE:
MSMg01no203_g10.g1 PHD_FILE: MSMg01no203_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:32 2005
         (439 letters)



>mm_chr13_7484007_7484845
          Length = 839

 Score =  748 bits (387), Expect = 0.0
 Identities = 426/439 (97%), Gaps = 1/439 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaaaagtaaaaagaaaaaaaggtttactcagagccagacactaactggcagcagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 201 tctaaaaagtaaaaagaaaaaaaggtttactcagagccagacactaaatggcagcaactc 260

                                                                       
Query: 61  tgagaagcctgagtaacctatggaagcttatagagacgactcagtggtgaaggagaatat 120
           |||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||
Sbjct: 261 tgagaagcctgagtaacctatggaaggttgtagagatgaatcagtggtgaaggagaatat 320

                                                                       
Query: 121 gcagagcccatagtatccctggaacaataacaataataacaaatgcaggatctatgagaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gcagagcccatagtatccctggaacaataacaataataacaaatgcaggacctatgagaa 380

                                                                       
Query: 181 gatgcttataaaaagtgtacaaacaaaattggaatccatggcccatgctgctgtcccagg 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gatgcttataaaaagtgtacaaacaaaattggaatccatggtccatgctgctgtcccagg 440

                                                                       
Query: 241 atgtgttgaatctctaggttcatgtggttgtccatggtctgggccaccaatggaaaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgttgaatctctaggttcatgtggttgtccatggtctgggccaccaatggaaaccat 500

                                                                       
Query: 301 gtcaatatctaagacctgtgttaccaccagtagccaaatgcaccgcccctagcatatgct 360
           |||||||||||||||||||||||||||||||||||||||| |  | ||||||||||||||
Sbjct: 501 gtcaatatctaagacctgtgttaccaccagtagccaaatggat-gtccctagcatatgct 559

                                                                       
Query: 361 accagtggaggccatgttagagcccctggtctgtcctgctgcccgggaatatgttggggt 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 accagtggaggccatgttagagcccctggtctgtcctgctgtccgggaatatgttggggt 619

                              
Query: 421 ctatggttctgctgcagct 439
           |||||||||||||||||||
Sbjct: 620 ctatggttctgctgcagct 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)