BAC Information

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BAC

Clone NameMSMg01-203I08
Chromosome13 (Build37)
Map Location 50,529,485 - 50,529,672
singlet/doubletsinglet
Overlap genenone
Upstream geneIppk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17
Downstream geneGm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203I08.T7 (MSMg01no203_i08.b1)MSMg01-203I08.TJ (MSMg01no203_i08.g1)
ACCAG388257AG388258
length723725
length of high quality
(start - end)
188 (127 - 314)330 (77 - 406)
definitionCHROMAT_FILE: MSMg01no203_i08.b1 PHD_FILE: MSMg01no203_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:42 2005CHROMAT_FILE: MSMg01no203_i08.g1 PHD_FILE: MSMg01no203_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTGAGCCAGGTATCCTGGCAGCAGAGCACAGCCAGGCTCTGTTCTGCC
TCTGCTCACTTCTGGCACTCTGCTCCTTATGGTAATCATTTAAAAACAGT
GCTGTGTATCATAGATGCCTGTGGCCATGTAGGACATAGATGGTGCCGTG
AGAGCGTCTACCCTGAGGCTGTCAGTGGGAGTCCTAACCTAGCTCCACCA
CAGTTATATATGCTGTTCAATGACTCTGATAATGAGGGTAAGCAGGACAG
AGCCATCCCAAGAGAGCCTTGGAGAATGGGGTGGAGAACTATGAGAAAGA
TAAACCAGCATACTTGTATTATGCCGCCCCAGCAAGAAAGACAACTGTCA
TGTTCTAAAGATGACACCCCCCACCAGATCAGCCTAATATGACGATTTCT
GCTGGAGATGTCCTGCGCATGCTCCATTTGCAGGTCATATTAAGAGCAGT
CATCCTCAATACACATATGAATTCCTGCTAAAATCCCTCCTTGGTAAAGT
GTGGGCTCTGACATTACAGTGATGATAGCTGGCTCTATTGCTCCCACTCA
CGATCACTATTAGTTCTAGCTACCCTGCTCTGTATTTGTGATCTCCTTGT
TAAGTTAATTCCTACTTTAGACTTATTACCCTTTTTTTCTTTGTCTACCC
ATTCCATCTCGATGTACTGATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGAGTCCTCCTAGGATTGTAAC
CTCATGTTTGCTTTCAATGAGCTTGCACCAAGTCCATGTCCATCCGTCTC
TTGCCTGGACTGGGGGATGACATGGTGTCGCCAACGCCACCTCCTCCCAC
GGCCTCGCAGGCTCTTTGGCCGAGGTGGCAACACCTGCGCGGTCCTGTAG
GGTCCGCTCAGCCACTGCCCTCCTGCACTGGGGAACACCGGGCACTGCCC
CGCCGAGTGGGACCAGGGATCGAGGCGCCCTCTCGGGCTGCCCTCCAACT
GAGGCTCCTCTGAGGCCCAGGCTGCTGCTGCTCCAAGCCATGCACTGTTC
CCTCTTATCCGCGCTAGCCCCCCCGCCTGACCACCTGCTTTCTCATTCTC
TTGCCAGCTCCCATTTGCTTCCTCCATAAGTCCACCGTTGGACTTTCTCC
TAATTTCCAACACCGTGAGCTACTTTTTCTGACTCTGTGATTGACTTGTC
CACCGTATTCCATGGCACACTGTCAGTTTAATCATTTTCCTTAACCTTCT
CCTGCAATATTGCAACATATCCTTACCCCAATAAAGCATATACTAATTTT
AAACTGTCCAACACTCTTCTATATCTCCTTCCCTTTTTCACCCCTTAATC
CCATCTGTTCTTTCTGTTGCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_i08.b1 MSMg01no203_i08.b1 CHROMAT_FILE:
MSMg01no203_i08.b1 PHD_FILE: MSMg01no203_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:42 2005
         (188 letters)



>mm_chr13_50529285_50529872
          Length = 588

 Score =  348 bits (180), Expect = e-100
 Identities = 186/188 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatggtaatcatttaaaaacagtgctgtgtatcatagatgcctgtggccatgtaggaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ttatggtaatcatttaaaaacagtgctgtgtatcatagatgcctgtggtcatgtaggaca 260

                                                                       
Query: 61  tagatggtgccgtgagagcgtctaccctgaggctgtcagtgggagtcctaacctagctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagatggtgccgtgagagcgtctaccctgaggctgtcagtgggagtcctaacctagctcc 320

                                                                       
Query: 121 accacagttatatatgctgttcaatgactctgataatgagggtaagcaggacagagccat 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 accacagttatatatgctgttcaatgactctgagaatgagggtaagcaggacagagccat 380

                   
Query: 181 cccaagag 188
           ||||||||
Sbjct: 381 cccaagag 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)