BAC Information

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BAC

Clone NameMSMg01-205J16
Chromosome13 (Build37)
Map Location 103,473,608 - 103,473,799
singlet/doubletsinglet
Overlap genenone
Upstream genePik3r1
Downstream geneCd180, Mast4, EG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205J16.T7 (MSMg01no205_j16.b1)MSMg01-205J16.TJ (MSMg01no205_j16.g1)
ACCAG389530AG389531
length760766
length of high quality
(start - end)
239 (18 - 256)192 (122 - 313)
definitionCHROMAT_FILE: MSMg01no205_j16.b1 PHD_FILE: MSMg01no205_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:31 2005CHROMAT_FILE: MSMg01no205_j16.g1 PHD_FILE: MSMg01no205_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCCTATTTCGAGAGGATCCGCGGAATTCTTTGTTCTGCTCTGAGCCC
CATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGCCC
TTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGA
TCCTTTCCGAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTT
GCCTTGCAGAAACTTTGGAGCTTTATTATTTCTCATTTGTCAATTCTCGA
TCTTAGAGCACAATTCATTGCTGTTCTGTTCAGGAACTCTTCCCTTGTTT
TTTTATCTTCAAGTCTTTTCCCCACTCTCTCCTCTTTATGCTTCCCCCCC
CCCCCCCCTAGGTTTTGTTTCTTGATTCTTTTATACCCCACTTTCCCCCC
AAAAAAAAAATATGGGTTTGGTCTTTCTTCTTTTCCTCCTTCTCACCCCT
TTGCCTCTGTACCACCCGTTTTTTCTCGCTGTTTTTCCTTTTTCTTCCCC
TTTCCTTTCCTTTCTTTTCCCTTACTTTCCTTCTCTTCCCTTTTTTTTCC
CTTTTTCCTTTTTCTTTTCCTTTCTTTCTTTTTCCCCTTTCCTTTTTCCC
ATCTTTCTTTCTTTTTCTTTTTTCTCCTTCCCTTATATTCCTTTCCCTAT
CCCTCATATTTTTTTTTCCCCCCCTCCTTTCCCCATTCCCCCCTTTCCTT
TTTCCTTTTTTTTTTCCTTCACTTTTTTTCCATTTCACTTTTTTTCCCCT
TTCTTTTTTT
CGATGATGTGGGTAGCCTGGCGGCGCCGGCTCCCGAGTTTAGGTGAACTA
TAGAAGGTTCGCGAAATATCACTCTGTAGAGCAGGCTGGCCTCGAACTCA
GAAATCTGCCTGTCTCTGCCCCCTGAGTGCTGGGATTAAAGGTGTGCGCC
ACCACTGCCCGGCTATGTGTATTTCTTTACTAGTTCTCCATTTCATTTCT
ATTGCATTTTGTTCCTGACCATCCTTTCCCTGTAAGACATGTCTATTGTG
TTAGCATCCACCTTTGACTTCCACCAGCTCTCTCTCTTTAAAGTGTGTTC
AGGAGCTTAAGGAGGTCTTTTTTTTTAGATTTCTCCAGATTTGGACATAT
AGGTTTTTTTTTTTCCCCCCCCTCCCCAATGGTAGTTTTATTATTTTCTA
TTTATGTCTCCCCCCTCCTTTAAAAAAAAAAACATTTCTCGTTTCCTTTT
ACTTTCATCCTTCCTCTTTTTCCCCTCCTTCTGTTCCCTTCCTTTTCCCT
TCTCCTTTTCTTTCCTTTTCCCCTTTCCCTCTCCTTTCCTTCCCCCTTTT
TCCCCTTCCTCCTTCCCCTTTCTTCCCTTTTTCTTCCCCTTTTCCCTTCC
TTCCTTCTCCCTTTTTTTTTTTCCCCCCCCCTTTTTCCTTTTTCCACCTC
CCTTCACTTTTTCCCCCCCCCCGCCTTTTTCCCTCCTTTTCCTTTTTCCC
CCCTTTCCCTTTTTATTCTTTCCCCTTTTCCTTTTTCCCACTTATCCCAT
TTCTTTCTTTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_j16.g1 MSMg01no205_j16.g1 CHROMAT_FILE:
MSMg01no205_j16.g1 PHD_FILE: MSMg01no205_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:31 2005
         (192 letters)



>mm_chr13_103473360_103473951
          Length = 592

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgagtgctgggattaaaggtgtgcgccaccactgcccggctatgtgtatttctttact 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctgagtgctgggattaaaggcgtgcgccaccactgcccggctatgtgtatttctttact 381

                                                                       
Query: 61  agttctccatttcatttctattgcattttgttcctgaccatcctttccctgtaagacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agttctccatttcatttctattgcattttgttcctgaccatcctttccctgtaagacatg 321

                                                                       
Query: 121 tctattgtgttagcatccacctttgacttccaccagctctctctctttaaagtgtgttca 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctgttgtgttagcatccacctttgacttccaccagctctctctctttaaagtgtgttca 261

                       
Query: 181 ggagcttaagga 192
           ||||||||||||
Sbjct: 260 ggagcttaagga 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)