BAC Information

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BAC

Clone NameMSMg01-206N16
Chromosome13 (Build37)
Map Location 4,771,802 - 4,772,307
singlet/doubletsinglet
Overlap geneEG432723
Upstream geneCalml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206N16.T7 (MSMg01no206_n16.b1)MSMg01-206N16.TJ (MSMg01no206_n16.g1)
ACCAG390306AG390307
length716729
length of high quality
(start - end)
506 (129 - 634)285 (79 - 363)
definitionCHROMAT_FILE: MSMg01no206_n16.b1 PHD_FILE: MSMg01no206_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:09 2005CHROMAT_FILE: MSMg01no206_n16.g1 PHD_FILE: MSMg01no206_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGCTTATTTCACATTGCCAAGGCACACTGGCAACTGCAGCT
GACACAAGAGATAATCCATGTTTCACCCAAGAACAGATAAAGAAGAGTAT
GAGATTCTTGGAGCTAACTCAGGCTGGGAACAGGAGAGGTGTTCATTGCT
GTTCTGTAAACAGCAAAGACAGGAGCAGAATAAGGAGAATGTCATGTTGA
ACCTGTGAGTCACAAGACCAGAACTAAAACAAAGCCCTCGGGGGCCATAT
ACACCCCAAGAAGCCAAAGGGGTGCTTTGGAGAAAGTCTAACTTCATTGT
GCTTATAGAGTAGAGTGGTTAATGGAGCCAGCATTATGAACCTGCATATA
CAGCTCTTTCTTGTTCCTCCCCAAGAACAGTAGCTTTTCAGAAAGTTGAA
GGAAAAAAAATAGCAAGTATTGGAAGAAGGTGTTACAGTAACTAGTACTG
TATGTTTACTTTGCCTAGAAAGGATCTCATGCCATCCAGGCTGGCCTATT
GAGGTTGGTCTTCACCTTTTAATCCTCTATGTGCTATTTCTCTTTTGTGA
GGATTAGAGACATGATACCACCTTGCACCATTTAACATATGTTGGGCATT
GAACCCCATTGTAGAAATAATATTTCAGTATTCACAGAGCCCGAGAGGTG
CATTCCTTAGATTATG
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGAAGGTTACCTATTCAG
TAACATTCAAATTTACTTCTATTACACACAGTGAAACTAATTAGGCATTA
CAAAGAACCGAGCCAGAATAGCTCAAGGCTGGTCTGCAGAGGGTTTACTT
GAGACAATAGCCAGTCTTACCCAGAAAAAGGAATTCACAATGGCCTAGTG
AACAGGTGGGTTCACCATGAAAGAGTTAGGGGAACCCCCTGAGACAGGTT
TCTTCACTTGACCCAAAGAAACAGCATAAATCAGGCATTTACTAAGAACA
CCTGGTGGTGGGCTTATTAATAGACTACCTTTACACCTGGCTCCCTTCTT
AGTGGCCAGAGCTTGGTCCCCCCCTTCTTTTGATGTATACATTCCTTTTG
TATTGTGTCACTGTAACTCGGTGGATGTATCTTGCCTGGTTTCTTGTTAT
ACTTCTGTATAAAAAGCTCGATGCTCGTCTTGACAAATTACATTCAGATT
CTACACAACCTCAAGTGCTGAATTTGTCTGTCATTTTTGCCGACTCCTTG
CCCATCTGCAACCAGAGATCCCGTTCTACACAGACCAGGCACCGAAGAGG
ATCTGCAGGACATATCTTTCTCTCCCTCTTAATTTTTTAGTCCGGATCTC
TCTTTAATCCCCAAGACCATCATTTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_n16.b1 MSMg01no206_n16.b1 CHROMAT_FILE:
MSMg01no206_n16.b1 PHD_FILE: MSMg01no206_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:09 2005
         (506 letters)



>mm_chr13_4771602_4772507
          Length = 906

 Score =  963 bits (498), Expect = 0.0
 Identities = 504/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaacagataaagaagagtatgagattcttggagctaactcaggctgggaacaggagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaacagataaagaagagtatgagattcttggagctaactcaggctgggaacaggagag 260

                                                                       
Query: 61  gtgttcattgctgttctgtaaacagcaaagacaggagcagaataaggagaatgtcatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgttcattgctgttctgtaaacagcaaagacaggagcagaataaggagaatgtcatgtt 320

                                                                       
Query: 121 gaacctgtgagtcacaagaccagaactaaaacaaagccctcgggggccatatacacccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacctgtgagtcacaagaccagaactaaaacaaagccctcgggggccatatacacccca 380

                                                                       
Query: 181 agaagccaaaggggtgctttggagaaagtctaacttcattgtgcttatagagtagagtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagccaaaggggtgctttggagaaagtctaacttcattgtgcttatagagtagagtgg 440

                                                                       
Query: 241 ttaatggagccagcattatgaacctgcatatacagctctttcttgttcctccccaagaac 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 441 ttaatggagccagcattatgaacctgcatatacagctctttcttgttccttctcaagaac 500

                                                                       
Query: 301 agtagcttttcagaaagttgaaggaaaaaaaatagcaagtattggaagaaggtgttacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtagcttttcagaaagttgaaggaaaaaaaatagcaagtattggaagaaggtgttacag 560

                                                                       
Query: 361 taactagtactgtatgtttactttgcctagaaaggatctcatgccatccaggctggccta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taactagtactgtatgtttactttgcctagaaaggatctcatgccatccaggctggccta 620

                                                                       
Query: 421 ttgaggttggtcttcaccttttaatcctctatgtgctatttctcttttgtgaggattaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgaggttggtcttcaccttttaatcctctatgtgctatttctcttttgtgaggattaga 680

                                     
Query: 481 gacatgataccaccttgcaccattta 506
           ||||||||||||||||||||||||||
Sbjct: 681 gacatgataccaccttgcaccattta 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)