BAC Information

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BAC

Clone NameMSMg01-208F13
Chromosome13 (Build37)
Map Location 27,387,397 - 27,557,333
singlet/doubletdoublet
Overlap genePrl6a1, Prl8a2, Prl2b1, Prl8a6
Upstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1
Downstream genePrl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208F13.T7 (MSMg01no208_f13.b1)MSMg01-208F13.TJ (MSMg01no208_f13.g1)
ACCAG391260AG391261
length719776
length of high quality
(start - end)		311 (46 - 356)339 (438 - 776)
definitionCHROMAT_FILE: MSMg01no208_f13.b1 PHD_FILE: MSMg01no208_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:08 2005CHROMAT_FILE: MSMg01no208_f13.g1 PHD_FILE: MSMg01no208_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,387,397 - 27,387,704)(27,556,996 - 27,557,333)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGAAGCAGTGTTCACAGGTCAACACCAAGCTGCAGTGTGACTT
TTGAGGGATGCAGCTAAAATTGATTCAGCCATGCTCCTGTAAGTAATCTC
TTACCTGTGCATGAATGAAATCCTTTCTGCCCATTTACTGATGTCCTGTT
GGGTTGATTAATCATTTATTTATACCTCAGGAGAAGTGGAACAATTCCTC
GGACCTAAAGAGGAAAAGTAGTAACATTTATTCTTGTCTGGGTCGCATGT
GGATTTACTTACCAGAACCTGTGAAGCACTCAGTTCTCAATCCTAAATTG
ACACTGTTATTTTATTTAACCCTCCCACCACCGCTTACACTAGGGCAATG
AGGTAGGAGTGCGTACCCCCCCAGAAAAGCAAACTCATAGAAGCAGGTGC
AAGGGGGATGGGATAGGGGGTATGCAGAGGGAAACTGGGGAGGGGGATAT
TNTTACTGNCTTTACTTCTCCGTACCGTACGACCCCATCTTCATTCTCAA
CGGATACCTCACTCTCCATAAAAACCATCCTTATTTTCTATACGATTATT
TTTCTCCCTTCTTGCTATTTCTTTACCCTTTCGGTACTTTTACCACTACT
CTATTTTTTTTCTTCCCCAATTTTACATCCATACATAACAAATCTTCCTG
TCTCTCTCAACCCAACTTG

ATATTATTTTTTTTCCTGTTAAATTTTTATAANNNNNNCNNNNNNNNNNN
NTTTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAAAAAGGAACACTAAC
AATGTAGTAAACAAGTAACTTATTATCCTTTTGATTTTTAGGTCTATCCT
ACAGCAGAGGTGAAGGAAGAAATTCCCAGCTGGGAACATTTTCTTTCTTT
AAATCACATGAAAAAACAACAAATTTTTGAAGGGCTTCACACTTTTCAAC
TGTCTAGAACATCATACAAAGTACACTCTATTTCTTCTCAGAACATTGAA
GTGTCATAAACTGGGAAAGATTACGAAGTACACATTTACCATGTCTGGTT
TGGAAATGCTCCATTATATTTCATTACCGCACCCACGTGCTTCAGTTGTA
TACATTTCAAATGCATGTGTGTGCACAATGTTTCTCTTTTTGAAAAATAA
AAGCATTCTTTTTGGAAATGTCCAAATCTAAAACTCCTATTCATATTTTG
TTATTTGAATAGAATATATATCAATAAAGTTAGGTTGTCCCAATGAAATA
TATCACTAAAAATAGATGTAACACTAGCAAATAAAGTCAAAGTTTACTTC
AATTAATTCACATTTAATTAACAAAAAAGTAATGAAAGTTAAGTTACTAT
AATCAAAGTATAAACCTCATTAACTGATCCATGTATCATAATCAGAATTA
TAAAATTTTTAATGCTTCATGTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_f13.b1 MSMg01no208_f13.b1 CHROMAT_FILE:
MSMg01no208_f13.b1 PHD_FILE: MSMg01no208_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:08 2005
         (311 letters)



>mm_chr13_27387194_27387904
          Length = 711

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgaagcagtgttcacaggtcaacaccaagctgcagtgtgacttttgaggga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgaagcagtgttcacaggtcaacaccaagctgcagtgtgacttttgaggga 263

                                                                       
Query: 64  tgcagctaaaattgattcagccatgctcctgtaagtaatctcttacctgtgcatgaatga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcagctaaaattgattcagccatgctcctgtaagtaatctcttacctgtgcatgaatga 323

                                                                       
Query: 124 aatcctttctgcccatttactgatgtcctgttgggttgattaatcatttatttatacctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatcctttctgcccatttactgatgtcctgttgggttgattaatcatttatttatacctc 383

                                                                       
Query: 184 aggagaagtggaacaattcctcggacctaaagaggaaaagtagtaacatttattcttgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggagaagtggaacaattcctcggacctaaagaggaaaagtagtaacatttattcttgtc 443

                                                                       
Query: 244 tgggtcgcatgtggatttacttaccagaacctgtgaagcactcagttctcaatcctaaat 303
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgggtcgcgtgtggatttacttaccagaacctgtgaagcactcagttctcaatcctaaat 503

                   
Query: 304 tgacactg 311
           ||||||||
Sbjct: 504 tgacactg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no208_f13.g1 MSMg01no208_f13.g1 CHROMAT_FILE:
MSMg01no208_f13.g1 PHD_FILE: MSMg01no208_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:08 2005
         (339 letters)



>mm_chr13_27556796_27557534
          Length = 739

 Score =  584 bits (302), Expect = e-171
 Identities = 329/338 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttcagttgtatacatttcaaatgcatgtgtgtgcacaatgtttctctttttgaaaaa 60
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 538 tgcttcagttgtatacatttcaaatgcatgtgtgtgtataatgtttctctttttgaaaaa 479

                                                                       
Query: 61  taaaagcattctttttggaaatgtccaaatctaaaactcctattcatattttgttatttg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 478 taaaagcattctttttggaaatggccaaatctaaaactcctattcatattttgttatttg 419

                                                                       
Query: 121 aatagaatatatatcaataaagttaggttgtcccaatgaaatatatcactaaaaatagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 418 aatagaatatatatcaataaagttaggttgtcccaatgaaatatatcaccaaaaatagat 359

                                                                       
Query: 181 gtaacactagcaaataaagtcaaagtttacttcaattaattcacatttaattaacaaaaa 240
           ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtaactctagcaaataaagttaaagtttacttcaattaattcacatttaattaacaaaaa 299

                                                                       
Query: 241 agtaatgaaagttaagttactataatcaaagtataaacctcattaactgatccatgtatc 300
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 298 agtaatgaaagttaagttactataatcaaaatgtaaacctcattaactgatccatgtatc 239

                                                 
Query: 301 ataatcagaattataaaatttttaatgcttcatgtcat 338
           ||||| ||||||||||||||||||||||||||||||||
Sbjct: 238 ataataagaattataaaatttttaatgcttcatgtcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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