BAC Information

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BAC

Clone NameMSMg01-212C19
Chromosome13 (Build37)
Map Location 108,170,431 - 108,334,550
singlet/doubletdoublet
Overlap geneApoo, AI197445
Upstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366
Downstream geneLOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212C19.T7 (MSMg01no212_c19.b1)MSMg01-212C19.TJ (MSMg01no212_c19.g1)
ACCAG393625AG393626
length716713
length of high quality
(start - end)		551 (66 - 616)221 (129 - 349)
definitionCHROMAT_FILE: MSMg01no212_c19.b1 PHD_FILE: MSMg01no212_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:52 2005CHROMAT_FILE: MSMg01no212_c19.g1 PHD_FILE: MSMg01no212_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,334,004 - 108,334,550)(108,170,431 - 108,170,650)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TATTTGTCACCTTTCAAAGACTGAGGTAAAACTTCAGAGTTCCATGTATC
CATGTTTATGTTTAGCCAATTTCATCTCTCCCCAATCTCTGTGGGATGCT
GTTACTGGAAGGCTGGATCTGTGGCAGGATGGCAATAGAGTTAAGATAGT
CTCTTCATTACACAGTAGCTTACCCCTTGGAAGAAGAGAGAAGACCCAGG
GGGTTTCCCACCTAGTGTCCAGAGATGCATACTCTGGAATACTTGGTCTT
GTTCTGGGAAGAATATCTTAGAGCAGAAGATGTAGTGGAAAGTATTATGA
CAATGAATGACTGCCAGCTACCTTATTAAGAACCCGACTGAAACTTAATC
ACAAAGCAGACCACAGTAACCCAGCTCCATACTCTCTACCACCCTCTCTC
TCTAGGGTCCGCTCTCTAGAGCATCACTTACCCGGCACTTAGTAGCAAGC
CTGTGGTCTGAGGAAGTAGAATCACATTTTTTTTTGTTGCTAATTATTAA
AGTGATCCAGATTTTAGAGTCAAATCAACAGGCATAGGAAATGAAGTCAT
CTGTGACTTCAGATTTTATACATGGAACAGAAACTTTTATGTCGTTTAGT
AGAGAATAAGTTGGTGTGCCTTTTTAAAAACAAATTGTAATGAAAAGATG
ACTACATCATTCTCTT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCACTAGAAACAATGCCAACAAGAAGACAATG
GAGCAGCATTTTAACCCATAAAAATGGGGGGAGGGGACAAACGTTAACAA
CTTTAAGTCTGGAATCCATGACTTAACCAAAGTGTCTTTCAAATGAAGGT
GAGATAAAGAGTAGGTAGATGAACAAAAGATGAACTCATTCATTCCTCCT
GCCTCCCAGATCTGCCTTAGTGGAAATGTAAAGAGGCTAAAGCAAAAGTA
AATCCATGTTTTTTTTTTATTTTTCTAAATTTGGNAGGAAATTTGAAATT
TTGGTGNTTCCCCGAGCCAACCCCCTAANAANAATAGNANAAGNAANAAG
AAGGGAAACCAAATNGNGAAAAGCAANNGGGGGAGAGGGGGAANAGNANG
CNANGGCNAGAAGGGCAGGCCGGAGCACCAAAGAAAGGGCNACAAAACCC
CAANCCCCCGGNANGAAGAGACGGANCACCNAGGGCCACAGNNGANNANG
NNGGNCNCCNNCNANNCNGAAAGAGCCAAGNANNNANCCCCACCAAGACC
GGCAAGCCCCCCAAGGAAGGGCCAGCGCAACAGCGCCAGAANNACAAACA
CAGGAACGCCCANAAGAGGAGGAAACCCCNGCGCGACAAAAGAGGAGCAG
CAACGAAAAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_c19.b1 MSMg01no212_c19.b1 CHROMAT_FILE:
MSMg01no212_c19.b1 PHD_FILE: MSMg01no212_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:52 2005
         (551 letters)



>mm_chr13_108333804_108334750
          Length = 947

 Score =  963 bits (498), Expect = 0.0
 Identities = 537/552 (97%), Gaps = 6/552 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagactgaggtaaaact-tcagagttccatgtatccatgtttatgtttagccaatttca 59
           |||||||||||||||||| | |||||||| |||||||||||||||||||||  |||||||
Sbjct: 747 aaagactgaggtaaaactat-agagttccgtgtatccatgtttatgtttagagaatttca 689

                                                                       
Query: 60  tctctccccaatctctgtgggatgctgttactggaaggctggatctgtggcaggatggca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tctctccccaatctctgtgggatgctgttactggaaggctggatctgtggcaggatggca 629

                                                                       
Query: 120 atagagttaagatagtctcttcattacacagtagcttaccccttggaagaagagagaaga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atagagttaagatagtctcttcattacacagtagcttaccccttggaagaagagagaaga 569

                                                                       
Query: 180 cccagggggtttcccacctagtgtccagagatgcatactctggaatacttggtcttgttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cccagggggtttcccacctagtgtccagagatgcatactctggaatacttggtcttgttc 509

                                                                       
Query: 240 tgggaagaatatcttagagcagaagatgtagtggaaagtattatgacaatgaatgactgc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgggaagaatatcttagagcagaagatgtagtggaaagtattatgacaatgaatgactgc 449

                                                                       
Query: 300 cagctaccttattaagaacccgactgaaacttaatcacaaagcagaccacagtaacccag 359
           ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 448 cagctaccttattaagaacccaactgaaacataatcacaaagcagaccacagtaacccag 389

                                                                       
Query: 360 ctccatactctctaccaccctctctctctagggtccgctctctagagcatcacttacccg 419
           ||||| |||||||||||||||||||    |||||| ||||||||||||||| ||||||| 
Sbjct: 388 ctccacactctctaccaccctctct----agggtctgctctctagagcatcgcttaccca 333

                                                                       
Query: 420 gcacttagtagcaagcctgtggtctgaggaagtagaatcacatttttttttgttgctaat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcacttagtagcaagcctgtggtctgaggaagtagaatcacatttttttttgttgctaat 273

                                                                       
Query: 480 tattaaagtgatccagattttagagtcaaatcaacaggcataggaaatgaagtcatctgt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tattaaagtgatccagattttagagtcaaatcaacaggcataggaaatgaagtcatctgt 213

                       
Query: 540 gacttcagattt 551
           ||||||||||||
Sbjct: 212 gacttcagattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 947
Length adjustment: 10
Effective length of query: 541
Effective length of database: 937
Effective search space:   506917
Effective search space used:   506917
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no212_c19.g1 MSMg01no212_c19.g1 CHROMAT_FILE:
MSMg01no212_c19.g1 PHD_FILE: MSMg01no212_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:52 2005
         (221 letters)



>mm_chr13_108170231_108170851
          Length = 621

 Score =  284 bits (147), Expect = 2e-81
 Identities = 202/230 (87%), Gaps = 20/230 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggaggggacaaacgttaacaac-tttaagtctggaatccatgacttaaccaaagtgtct 59
           ||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| |||
Sbjct: 201 gggaggggacaaacgttaacaacttttaagactggaatccatgactcaaccaaagtatct 260

                                                                       
Query: 60  ttcaaatgaaggtgagataaagagtaggtagatgaacaaaagatgaactcattcattcct 119
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 261 ttcaaatgaaggtgagataaagagtaggtagatgaacaaaagatgaattcattcattccc 320

                                                                       
Query: 120 cctgcctccca-gatctgccttagtggaaatgtaaagaggctaaagcaaaagtaaatcca 178
           ||| || |||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 cct-cc-cccaagatctgccttagtggaaatgtaaagaggctaaagcaaaagtaaaacca 378

                                                             
Query: 179 tgtttttttttta--------tttttctaaatttggnaggaaatttgaaa 220
           ||||        |        |||| |||||||||| |||||||||||||
Sbjct: 379 tgtt--------agaaggcaattttcctaaatttggtaggaaatttgaaa 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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