BAC Information

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BAC

Clone NameMSMg01-212O15
Chromosome13 (Build37)
Map Location 97,044,613 - 97,044,899
singlet/doubletsinglet
Overlap genenone
Upstream geneZbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
Downstream geneLOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212O15.T7 (MSMg01no212_o15.b1)MSMg01-212O15.TJ (MSMg01no212_o15.g1)
ACCAG394097AG394098
length710723
length of high quality
(start - end)
59 (239 - 297)283 (70 - 352)
definitionCHROMAT_FILE: MSMg01no212_o15.b1 PHD_FILE: MSMg01no212_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:49 2005CHROMAT_FILE: MSMg01no212_o15.g1 PHD_FILE: MSMg01no212_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGCAAACGACTCACATTCCCACCCGCCGCGGAANNCCAANGTT
GCGGCAGGCGGGGGCCNGNANACAAGCACAGGCGGGAGAANNAGACGGAG
GTTTCCCCACCACAAGGGGNAANACGAAAGAAAGGGGGAGGGAGGGGAAN
CCCCANGGNGGNAAAAGAACGGCNANCCNGCAGACCAAACACAACGGCAC
ACACNNGNAGAAAANAAACANACGNANNNCCNAGTTTTTTTTTTAGATTC
AAACATGATTTCAAAGGAGTTCATAATCCTAACAGAGGACTGCCCTGAGT
ATTTTTTTTTAAACNGCNAGCCNCNAAGGAACAGGGAAGNGNCAGGACAC
CCCCCCGAGGCAGCCAGAACACCGGAANNGNGNGGAGAGCAGNACGACCC
CCACCGAACAGAAGGGGGCAAGGAAGGCCCCCAGCAGGCAGAACAGGAGG
CGGCCNGGACACCCGGGACAGNAACAGCGGCCCCAGGAGCAGGCCCCAAN
AAAAGCCCGCAAAGAAAACAACCGAGACAAAGACACCGAAGAAGAAGGGA
GAGACGCAGGGAAAACCACAGAAAAGAAAGCCAGGGCGCAGCCAGAANCG
CGCAAAGGGAACCACCGCCGAANCCAGCCAAGCCATGTTTTTTTTATAAA
GTAAACCAAGTCTGAACTGTGACTGCCTTCCATTAATCCATGCACCGAAT
ATAAAATACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTACCAGATAATGAGCTAGCTTGATAACGTC
AGAGATCAAAGAGAAAGGCTTGCACAGTTCTGCACACAGAATCATAGCTT
TACTGTGGCAGCAACAGACTATATGGAAAACAGATTTTACAGTTTGGAAA
CCATCAGAGGCAAGACAGAGCCTTACAGTTCTAGTGAAATCCTAAGTCCA
AAGAACAAGAAACAAATGGAAATAAAACCCATGACAAATGGGAAAATTGA
AGGGTGCATGTCACATGGACGCACAGAAAGCGAAGGTGGGAAAATGACCA
GCTCTTTCTGACACAAGCGAAACTGCTAGCGTTACGATGGAGTCTTCCGC
ACTACCACCCCCGGCCCAGACTCCTTCATCCACCACTCTAACATTCCTTG
TGCCTACCAGCTTATTCAGTGAAATATCCGGATTTCTAATCTGATATCAA
GTTGTTAAGAACTACTGCTTGTTAATTCCCCTGGGTGTGGTGGTACACGG
CTGCTATGAAGGTGGAAATACTAAGATCGGGAGTTCATTTACAAGACTTG
GGCGAGTTGATCATGGCAGTTACCAAAGGAGGTTTTCCAAAGCCCCTTCT
GACATGGAGTCCTCCCAGTCACGTAACTCGTCCAAATGGTCAATAGCACC
AAAATAATGAACAATTCTAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_o15.g1 MSMg01no212_o15.g1 CHROMAT_FILE:
MSMg01no212_o15.g1 PHD_FILE: MSMg01no212_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:49 2005
         (283 letters)



>mm_chr13_97044413_97045099
          Length = 687

 Score =  528 bits (273), Expect = e-154
 Identities = 282/287 (98%), Gaps = 4/287 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaccagataatgagctagcttgataacgtcagagatcaaagagaaaggcttgcacagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaccagataatgagctagcttgataacgtcagagatcaaagagaaaggcttgcacagtt 260

                                                                       
Query: 61  ctgcacacagaatcatagctttactgtggcagcaacagactatatggaaaacagatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcacacagaatcatagctttactgtggcagcaacagactatatggaaaacagatttta 320

                                                                       
Query: 121 cagtttggaaaccatcagaggcaagacagagccttacagttctagtgaaatcctaagtcc 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 cagtttggaaaccatcagaggcaagacagagtcttacagttctagtgaaatcctaagtcc 380

                                                                       
Query: 181 aaagaacaagaaacaaatggaaataaaacccatgacaaatgggaaaattgaagggtgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaacaagaaacaaatggaaataaaacccatgacaaatgggaaaattgaagggtgcat 440

                                                          
Query: 241 gtcacatggac----gcacagaaagcgaaggtgggaaaatgaccagc 283
           |||||||||||    ||||||||||||||||||||||||||||||||
Sbjct: 441 gtcacatggacagaagcacagaaagcgaaggtgggaaaatgaccagc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 687
Length adjustment: 9
Effective length of query: 274
Effective length of database: 678
Effective search space:   185772
Effective search space used:   185772
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)