BAC Information

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BAC

Clone NameMSMg01-213A24
Chromosome13 (Build37)
Map Location 96,413,331 - 96,438,106
singlet/doubletdoublet
Overlap geneIqgap2
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r
Downstream geneF2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213A24.T7 (MSMg01no213_a24.b1)MSMg01-213A24.TJ (MSMg01no213_a24.g1)
ACCAG394189AG394190
length722720
length of high quality
(start - end)		684 (39 - 722)286 (67 - 352)
definitionCHROMAT_FILE: MSMg01no213_a24.b1 PHD_FILE: MSMg01no213_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:00 2005CHROMAT_FILE: MSMg01no213_a24.g1 PHD_FILE: MSMg01no213_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,413,331 - 96,414,009)(96,437,821 - 96,438,106)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCG
AGAATGTTCTCAACTGTGGTGACGCCTGTCTCCAATCAGTGAACATGCAT
GCACTATTCACAATGATTTCATACTTTAGATGCCCCTAGGAACCGTGATT
CCTAGCCATCAGTGTAGACCTTAGAGTTGACAGCACGAGAAGATGGCATT
CCAACAACAGACAGAACCAATTAAGAGGAAATTTCTTCCTGTTACTTATA
AGGACAAAGTGTCTGAGCTTGTGGGAGAGAGTTGGTCTGATTTCGTTTGC
ATGGCAGAACCTCACCATCTGTCTTTCCAGTTATCTGGATAACTGATGGT
TGCTCAGAGGCAGAAGGGTGGATACTTCTTCCTCCGGTCTGTCCTGAGCT
GTCAGAAAGTTCCGCACGACATGGCCCTGTCTTATAGCCGAGCCTGTGCC
CTGGGGCTGCACTGTGCTCCCCACTGCCAGCCTCGAGCCCTGGAAGGCAG
AGGTGGCGCTGGCCTCATGACTGTTGAGCCCAGATCCAGGCCACCGGTGG
GGTTCTCAGGTGAATGAATCATGCCTTCCATGATTTGACAACAAAAGAAA
CAGATGTCACCAAAGCAACACAGATCCCAACACGGCATACCTAAGATGCT
TGTGGCAGTTACATGAGTAGTTGAGTGTCTGGTAAAAATCAAGAGAGACA
GAATGCTTTCTCAGGCATATTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTGACCTAGCCCTGAGCATCAGGATAAGGAATGG
CATTCTTCCCATACTGCCGATGAAAAACCTCAGACCCAACCAATAAACAG
TAGGCAGCATGCAGGCAGTTAGCCTTCAGGCTCGCTCCCTTCACAACTGC
ACTGTACCTCAGTGATGTGCAGAAGCAACGTGAAGTTCATCATGATGACC
TCAGCATGCCATTAAAGGTTTCATGTCAACCGATGACAAAACTAGTCACT
AGAAAAGCAAATCTGTGTCAGGGACAGACCTCCTCCTTTGGGAGCCAGAG
CCATATGATGGTTTACCACCCCCACCCCCTTATTTTCATGGCATTATTTT
CTGAGCCGAATGACCCACAAAAAGACAAGAAATCCAGGGTACCGGATTAT
GGTTGGACTTTGATGGGCTGGCTATTGGTTTGTTCCCTGTTGACAATCTG
ATTACACACTGAGGGACCTGGGCAAGTACAAGCCATTAGCAGCAGACTCC
ACACCAGCAGGAAAACCACCCACCCTCAAAGAGGTGGGCCAGTAGTAGTT
CATTGTGTGGCTCCAGGCCTGCAGGTGCCTGAACCTTTGTTGTTCCCTGG
ATCGGATACTTAGAAGAACTCACTGCATGCAAGAGCCCCACGGAAAGTAC
TAAATAACAGATTGGAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_a24.b1 MSMg01no213_a24.b1 CHROMAT_FILE:
MSMg01no213_a24.b1 PHD_FILE: MSMg01no213_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:00 2005
         (684 letters)



>mm_chr13_96413127_96414210
          Length = 1084

 Score = 1290 bits (667), Expect = 0.0
 Identities = 676/679 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccgagaatgttctcaactgtggtgacgcctgtctccaatcagtgaacatgcatgc 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccgagaatgtgctgaactgtggtgacgcctgtctccaatcagtgaacatgcatgc 264

                                                                       
Query: 65  actattcacaatgatttcatactttagatgcccctaggaaccgtgattcctagccatcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actattcacaatgatttcatactttagatgcccctaggaaccgtgattcctagccatcag 324

                                                                       
Query: 125 tgtagaccttagagttgacagcacgagaagatggcattccaacaacagacagaaccaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtagaccttagagttgacagcacgagaagatggcattccaacaacagacagaaccaatt 384

                                                                       
Query: 185 aagaggaaatttcttcctgttacttataaggacaaagtgtctgagcttgtgggagagagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaggaaatttcttcctgttacttataaggacaaagtgtctgagcttgtgggagagagt 444

                                                                       
Query: 245 tggtctgatttcgtttgcatggcagaacctcaccatctgtctttccagttatctggataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggtctgatttcgtttgcatggcagaacctcaccatctgtctttccagttatctggataa 504

                                                                       
Query: 305 ctgatggttgctcagaggcagaagggtggatacttcttcctccggtctgtcctgagctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgatggttgctcagaggcagaagggtggatacttcttcctccggtctgtcctgagctgt 564

                                                                       
Query: 365 cagaaagttccgcacgacatggccctgtcttatagccgagcctgtgccctggggctgcac 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagaaagttcagcacgacatggccctgtcttatagccgagcctgtgccctggggctgcac 624

                                                                       
Query: 425 tgtgctccccactgccagcctcgagccctggaaggcagaggtggcgctggcctcatgact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtgctccccactgccagcctcgagccctggaaggcagaggtggcgctggcctcatgact 684

                                                                       
Query: 485 gttgagcccagatccaggccaccggtggggttctcaggtgaatgaatcatgccttccatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttgagcccagatccaggccaccggtggggttctcaggtgaatgaatcatgccttccatg 744

                                                                       
Query: 545 atttgacaacaaaagaaacagatgtcaccaaagcaacacagatcccaacacggcatacct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atttgacaacaaaagaaacagatgtcaccaaagcaacacagatcccaacacggcatacct 804

                                                                       
Query: 605 aagatgcttgtggcagttacatgagtagttgagtgtctggtaaaaatcaagagagacaga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aagatgcttgtggcagttacatgagtagttgagtgtctggtaaaaatcaagagagacaga 864

                              
Query: 665 atgctttctcaggcatatt 683
           |||||||||||||||||||
Sbjct: 865 atgctttctcaggcatatt 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no213_a24.g1 MSMg01no213_a24.g1 CHROMAT_FILE:
MSMg01no213_a24.g1 PHD_FILE: MSMg01no213_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:00 2005
         (286 letters)



>mm_chr13_96437621_96438306
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgacctagccctgagcatcaggataaggaatggcattcttcccatactgccgatgaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 486 ttgacctagccctgagcatcaggataaggaatggcattcttcccatactgcagatgaaaa 427

                                                                       
Query: 61  acctcagacccaaccaataaacagtaggcagcatgcaggcagttagccttcaggctcgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acctcagacccaaccaataaacagtaggcagcatgcaggcagttagccttcaggctcgct 367

                                                                       
Query: 121 cccttcacaactgcactgtacctcagtgatgtgcagaagcaacgtgaagttcatcatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cccttcacaactgcactgtacctcagtgatgtgcagaagcaacgtgaagttcatcatgat 307

                                                                       
Query: 181 gacctcagcatgccattaaaggtttcatgtcaaccgatgacaaaactagtcactagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gacctcagcatgccattaaaggtttcatgtcaaccgatgacaaaactagtcactagaaaa 247

                                                         
Query: 241 gcaaatctgtgtcagggacagacctcctcctttgggagccagagcc 286
           ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 246 gcaaatctgtgccagggacagacctcctcctttgggagccagagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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