BAC Information

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BAC

Clone NameMSMg01-213B07
Chromosome13 (Build37)
Map Location 107,091,389 - 107,091,937
singlet/doubletsinglet
Overlap genenone
Upstream geneHtr1a, EG668025, Olfr717-ps1
Downstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322, LOC100040350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213B07.T7 (MSMg01no213_b07.b1)MSMg01-213B07.TJ (MSMg01no213_b07.g1)
ACCAG394200AG394201
length727722
length of high quality
(start - end)
380 (42 - 421)549 (72 - 620)
definitionCHROMAT_FILE: MSMg01no213_b07.b1 PHD_FILE: MSMg01no213_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:02 2005CHROMAT_FILE: MSMg01no213_b07.g1 PHD_FILE: MSMg01no213_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTAAATTCTTACCCAAATGGATGGAAAATGTCATCCTGAGTGAGGTAA
CCCAGTCACAAAAGAACACACCTCGGTATGCACTCACTGATAAGTGGATA
TTAGCCCCAAAGCCCAGAATACCCAAGATACAATTCACAGACCACATCAA
GTGCAAGAAGAAAGACAACCAAAGTGTGGATACTTCAGTCCTTCTTAGAA
GAGGGAAGGAAATACTCATGGGAGCAAATATGGAGACAAAGTGTAGAGCA
GAGACTGAAGGAAAGGACATCCAGAGACTGCCCCACCTGGGGATCCATCC
CATATACAGACACCAAACCCAGACACTATTGTGGATGCCAAGAAGTGCTT
GCTGACAGGAGCCTGATATACCCCCCTCCTGAGAGGCTCTTTCAGAGCCT
GGCAAATACTGAGGCAGATGCTGGCATCCAACCATTGGACTGAGCATGGG
GTTCCCAATAGAAGAGCTAGAGAAACGACCCAAGGAGTTGAAGGGGTTTT
AAATCCATAGGAAGAACAACAATATCAGCCAACCAGACTCCCCCACCCCA
GCTCCCAGGATCTAAACTACCACCCAAAGAGTACACATGAAGGAATCCAT
GGCTCCAGCTGCATATGCGGTAGAGACTGGCCTTGTTGGGCATCAATGGG
AGGACAGTCCCTCTGGCCTGTGATTGN
TACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTAAGACCCCAAATTTGCAAATCAATA
GAAACTGTATATGCAGGCAAAACAGGAAAGTCTCTGTTATAAATCTACTA
CCCTGTTTGTGCACATTTGTAGTGAGCACAAGCTTTAGTTAACAACCAGC
CATCTGCTGTGCAAGCTAAAACCAAATTGACTCCATACAGCTTCCTGATA
GAAGAGATTTTTATAAATGTTTCTGTTGGATTTTTTAAAAGAAAACTATT
TTTCAAAAAAACACAACTGGAAGATGAAAATTACCAGTTTACAACTCTCC
TTCAAAGCACATGTGTTCACTTCATACCAGTTCACAACACAATTAGCTTT
TATTATCTGTAGTCACTTCCCCACCATGAAACTTGGGGATGGATCAATTG
GTATGGAAGATATGAGTAGCAAGCAGTTCAGAAATAGTTGGTAGAAATGA
CCTCTATGTCCCACAGTCCACAATCCTATCTCCATAGATCTGTAGGAACA
CCATCTTTACAGGATCAAAAGCAAACCACTGTAAGAGATAAATGAACTTT
CTCACTCCATATAGAACATGACTCCTATTAGCCATACCAAATACCCCTAT
ACTGATTTAGTATAAAATGAAACCCAGGGCCTCTCACACTTCTTTACCTG
ACTCCTGCCCATATTGATACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_b07.g1 MSMg01no213_b07.g1 CHROMAT_FILE:
MSMg01no213_b07.g1 PHD_FILE: MSMg01no213_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:02 2005
         (549 letters)



>mm_chr13_107091189_107092137
          Length = 949

 Score = 1007 bits (521), Expect = 0.0
 Identities = 542/549 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaagaccccaaatttgcaaatcaatagaaactgtatatgcaggcaaaacaggaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 atttaagaccccaaatttgcaaatcaatagaaactgtatatgcaggcaaaaaaggaaagt 260

                                                                       
Query: 61  ctctgttataaatctactaccctgtttgtgcacatttgtagtgagcacaagctttagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgttataaatctactaccctgtttgtgcacatttgtagtgagcacaagctttagtta 320

                                                                       
Query: 121 acaaccagccatctgctgtgcaagctaaaaccaaattgactccatacagcttcctgatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaccagccatctgctgtgcaagctaaaaccaaattgactccatacagcttcctgatag 380

                                                                       
Query: 181 aagagatttttataaatgtttctgttggattttttaaaagaaaactatttttcaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagatttttataaatgtttctgttggattttttaaaagaaaactatttttcaaaaaaa 440

                                                                       
Query: 241 cacaactggaagatgaaaattaccagtttacaactctccttcaaagcacatgtgttcact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaactggaagatgaaaattaccagtttacaactctccttcaaagcacatgtgttcact 500

                                                                       
Query: 301 tcataccagttcacaacacaattagcttttattatctgtagtcacttccccaccatgaaa 360
           |||||  |||||||||||||||||||||||||||||||||||||||||   || ||||||
Sbjct: 501 tcataggagttcacaacacaattagcttttattatctgtagtcacttcaggactatgaaa 560

                                                                       
Query: 361 cttggggatggatcaattggtatggaagatatgagtagcaagcagttcagaaatagttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttggggatggatcaattggtatggaagatatgagtagcaagcagttcagaaatagttgg 620

                                                                       
Query: 421 tagaaatgacctctatgtcccacagtccacaatcctatctccatagatctgtaggaacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagaaatgacctctatgtcccacagtccacaatcctatctccatagatctgtaggaacac 680

                                                                       
Query: 481 catctttacaggatcaaaagcaaaccactgtaagagataaatgaactttctcactccata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catctttacaggatcaaaagcaaaccactgtaagagataaatgaactttctcactccata 740

                    
Query: 541 tagaacatg 549
           |||||||||
Sbjct: 741 tagaacatg 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)