BAC Information

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BAC

Clone NameMSMg01-213F03
Chromosome13 (Build37)
Map Location 82,986,279 - 83,173,266
singlet/doubletdoublet
Overlap geneLOC667018
Upstream geneLOC238756
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213F03.T7 (MSMg01no213_f03.b1)MSMg01-213F03.TJ (MSMg01no213_f03.g1)
ACCAG394356AG394357
length740703
length of high quality
(start - end)
126 (74 - 199)283 (79 - 361)
definitionCHROMAT_FILE: MSMg01no213_f03.b1 PHD_FILE: MSMg01no213_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:19 2005CHROMAT_FILE: MSMg01no213_f03.g1 PHD_FILE: MSMg01no213_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,173,141 - 83,173,266)(82,986,279 - 82,986,561)
sequence
NATAAATTCNNCCACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAATGGAAGACAAAGAAGATATCTGTA
AATGTTTAACCTATCTCCACATGGCATTTGGATCCTCAAGACGTAAAAGA
AGATTATAATAATCTATGAATAGCCAAAAGACATCAATACTTAACAGAAA
ACAATGAANATATTCAAGGGAAAAGTCTAATAAAAAAATTTAACCATTTT
AAAATACAATACAGGTAGAAAAAATTTCCAGGAAGGGGTAACTGGGGTGG
TGGGGAATTGCCAAGCTTGTTACAAACCACCTTTGGGGAAAACTCAAGCC
GGGGAGTTTTCCTTTAAAAATTTGGAACCTATCCCCTTCCCCCGGAGGGT
TCCCCTTTTTTTTTTTTTTTCGGGGCCCCCCTCTCCCCCCGAAAAAAGTT
TTCTCCCCCCCCGGTCCATTTATAGGGCATTTTGGTTGTTTCCCCCCCCC
CCCCCCCCCCCAAAAATAAAGTGTTGTTCTCCTTTTTTTTTTAATATTTT
TTTCCCCACCCTCCCCTTTTCTTTATAATATACCTTTTTGTCCGCGCTTC
CCCTCTCTTATTTTTTTTAATAATTGGTTTTTGCTTTTCCGGTGGTCCTC
ATTATAAACATTTCCCCATCGTGGTTCCTTTTTTCCCCTTTTTCCCCACG
TTGTTTGGGGTTCCCTTTTGTTCCCCCTCCCTCCTTTTTN
ACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTATCGCACTATTCTTCAAA
AGCAAAACAAACTTTACACATGATTTTTGACTGCATGTTGCTTCCTCCAC
TGGACAGGTTGAAAAAATAAAATGGAGTACAGTGTCATAAATTTAAGGTA
TTCGGAGTAACCAAATAGAAACCGGATAGAAATAATAGAGATGCAAAAAT
TATAGGATTTTTCTAGTTCTAGTTGCCTGGCTAACTCTTCCGCAGTTAAA
TAGACTAGAATGTCGGGGTCATAATGTTGATTTTGCTTCAGGACACTGGA
GTTAGCCAAGTCATTTGTTCACCCCCCCACCCCCCCTCGTAGTGCACACA
TTGTGTGTGGTTTTAAGGACCCCACCCATGCCAGAATACAGTAGCTGTGG
ATAGCATTTATATTTAGTAAGACTGCAATGCACTCATTTGAAGTTGGAAG
ATGAGTATTTATTGAAGTACCTGGCACATCAGCATGAATATGCTGATTTT
GAAAAAACGATTCTTCTTCTGTGGAATCACACCTACTGTTTTTAGTAACA
CTTATTTCATCGACCTCCACATTTGTTACTAAAGTTACCACTCAGATGTA
CATTGAAACCTAGAAAAGAAAATGATAGATATTTTGAGCCACATTCTGTC
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_f03.b1 MSMg01no213_f03.b1 CHROMAT_FILE:
MSMg01no213_f03.b1 PHD_FILE: MSMg01no213_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:19 2005
         (126 letters)



>mm_chr13_83172941_83173466
          Length = 526

 Score =  213 bits (110), Expect = 4e-60
 Identities = 122/126 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatggaagacaaagaagatatctgtaaatgtttaacctatctccacatggcatttggat 60
           |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 326 aaatggaagataaagaagatatctgtaaatgtttaacctatctccacttggcatttggat 267

                                                                       
Query: 61  cctcaagacgtaaaagaagattataataatctatgaatagccaaaagacatcaatactta 120
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cctcaagaagtaaaggaagattataataatctatgaatagccaaaagacatcaatactta 207

                 
Query: 121 acagaa 126
           ||||||
Sbjct: 206 acagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no213_f03.g1 MSMg01no213_f03.g1 CHROMAT_FILE:
MSMg01no213_f03.g1 PHD_FILE: MSMg01no213_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:19 2005
         (283 letters)



>mm_chr13_82986079_82986761
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactatcgcactattcttcaaaagcaaaacaaactttacacatgatttttgactgcatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactatcgcactattcttcaaaagcaaaacaaactttacacatgatttttgactgcatgt 260

                                                                       
Query: 61  tgcttcctccactggacaggttgaaaaaataaaatggagtacagtgtcataaatttaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttcctccactggacaggttgaaaaaataaaatggagtacagtgtcataaatttaagg 320

                                                                       
Query: 121 tattcggagtaaccaaatagaaaccggatagaaataatagagatgcaaaaattataggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattcggagtaaccaaatagaaaccggatagaaataatagagatgcaaaaattataggat 380

                                                                       
Query: 181 ttttctagttctagttgcctggctaactcttccgcagttaaatagactagaatgtcgggg 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ttttctagttctagttgcctggctaactcttccgtagttaaatagactagaatgtcgggg 440

                                                      
Query: 241 tcataatgttgattttgcttcaggacactggagttagccaagt 283
           |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tcataatgctgattttgcttcaggacactggagttagccaagt 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)