BAC Information

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BAC

Clone NameMSMg01-214F14
Chromosome13 (Build37)
Map Location 67,416,516 - 67,416,753
singlet/doubletsinglet
Overlap geneA230042K10Rik
Upstream geneLOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457
Downstream geneE130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214F14.T7 (MSMg01no214_f14.b1)MSMg01-214F14.TJ (MSMg01no214_f14.g1)
ACCAG395030AG395031
length722714
length of high quality
(start - end)
239 (114 - 352)209 (416 - 624)
definitionCHROMAT_FILE: MSMg01no214_f14.b1 PHD_FILE: MSMg01no214_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:38 2005CHROMAT_FILE: MSMg01no214_f14.g1 PHD_FILE: MSMg01no214_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:38 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCTA
TTACCGAAACACACAAGTGTGAAGAATGTACTAAGGTCTTTGTCCTTACT
AAAAACTTGCCCAAACCCTCTTAATTAATACTAGAGTGAAATGTCACAAA
TGTGGAAAACATTGCACACCCTTTAATAAGCTTTCTTATATTTCTTAATA
CTAGGTAATTCAAACTGGAGTGAAATAGTACAAATGTTAAAATGTTCATA
TACTCTTAATACTTCTTCAACCCCAAAAAGTTATCAAAAGCTTCATGCTG
AATAGAATTCTCTAGTAAGTTTGAGGAATATGGTAAAGGCTTTGCAATCA
TTCACACAATCCTCGCCAAAAGTGGAGCTGTCAGGCTGTGTGGTTGTCCT
TCTGGATCTGGGTTTGATCCTTCCTTGCTGTCTTTTTCTTTCTTCTGTTA
TAGAATTGAAACCCTTGTTCTATACCAGTATGTAGAATAGTTGTCACTAG
TTTTTATGTTGTAGCAGCTCACAATTAAGAGATTGCCTTGAGTCTCACAT
GATACATGGACTGTGTTCTTTCATAGTGTTGTAATTGTTAAATCCTTTGT
GGACATTTCAAGTTGTAGCCTATTTTACTTTGGACATGTGGGTAAGTTTG
GTGAAAGGGAAGGGACGCTATGATCTAATCCTCTTCGTTTTACTTATTCC
GTCCACTTTTTCTTTCACACCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
AAAAATTCCAGTTTTATGTCTGATACCAAATTCCTTACAAAATGAAATAT
TTTTGCTCCCAGTATAGGATGGCCCATTATCTGTCTTAATGACTTTAGGC
AATCCCATAGCATTAAAGGCTTGTAAACAATGATCAATTGCATTTCTAGA
GGCCTCTCCTATATGTAGAGAAGCAAAAAGAAATCCTGAACAAGTGTCAA
TACAAACATGTATATATTTTAATTTTCCAAATTCTGCATGATGAGTTACA
TCCATCTGCCAAACATGATTGGGCATAAGACCTCGTGGATTATTTTCTAA
ATCGCCCACTGCAGATAATGTAATACATTTAGAGCATTGTTTTACAATCA
TTCTTGAATGCTCTTTAGTGATCTTATAGGGGCGAAGCCAATTAATATCA
CCTAACAATTTTTGAAAATCATTTAAAGTTTTTAAGCTGTCTCTGCGAAT
AACTATCTTCTGGGGAAAAACAGCTTGATCTGTAAGTCTAAAACCCAAAT
AATTATAAGGATCCTGAGTCTGTAACTTCTCAGGAGTCCTTTAACAACTA
ATGCCTGTTGTAAATCTTTATAACATACAAGCAAGCCCTGGGGGTCTTTT
CCTGCCATTAAGACATCATCTGTGCAATGAATGATGTACATCATAGGCCA
TTGTTGTCTCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_f14.b1 MSMg01no214_f14.b1 CHROMAT_FILE:
MSMg01no214_f14.b1 PHD_FILE: MSMg01no214_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:38 2005
         (239 letters)



>mm_chr13_67416316_67416953
          Length = 638

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccctcttaattaatactagagtgaaatgtcacaaatgtggaaaacattgcacaccctt 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 438 aaccctcttaattaatactagagtgaaatgtcacaagtgtggaaaacattgcacaccctt 379

                                                                       
Query: 61  taataagctttcttatatttcttaatactaggtaattcaaactggagtgaaatagtacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taataagctttcttatatttcttaatactaggtaattcaaactggagtgaaatagtacaa 319

                                                                       
Query: 121 atgttaaaatgttcatatactcttaatacttcttcaaccccaaaaagttatcaaaagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atgttaaaatgttcatatactcttaatacttcttcaaccccaaaaagttatcaaaagctt 259

                                                                      
Query: 181 catgctgaatagaattctctagtaagtttgaggaatatggtaaaggctttgcaatcatt 239
           ||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 catgctgaatagaa-gccctagtaagtttgaggaatatggtaaaggctttgcaatcatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space:   144670
Effective search space used:   144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)