BAC Information

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BAC

Clone NameMSMg01-214G17
Chromosome13 (Build37)
Map Location 68,763,949 - 68,931,973
singlet/doubletdoublet
Overlap geneAdcy2
Upstream gene3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik
Downstream geneLOC666205, LOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214G17.T7 (MSMg01no214_g17.b1)MSMg01-214G17.TJ (MSMg01no214_g17.g1)
ACCAG395076AG395077
length731732
length of high quality
(start - end)
508 (74 - 581)239 (129 - 367)
definitionCHROMAT_FILE: MSMg01no214_g17.b1 PHD_FILE: MSMg01no214_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:44 2005CHROMAT_FILE: MSMg01no214_g17.g1 PHD_FILE: MSMg01no214_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,931,466 - 68,931,973)(68,763,949 - 68,764,187)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGG
AATTCAGAGAATGTTTCTCTAGAATGAGAATACGTGGGTTTTTTTTTTCC
AGAACAGATTATTAAATAATACGACCAAATCATCTTGCTTAAAATAGAAT
TCAGTCTGCTTAAAATAGAGCTTCGGAGATGGCTCAGTGGGTATGTCTGA
ACGGCTCATTTGCCATTCAGACATGAGGACCTGAGTATGAATTCCTACAA
GACAGACAGACAGACAGACAGACAGACAGAAGAATCTTTACTCTCAGTGT
TCCTGTGGGAAGGTGGGAAGCAGTGATAGAAATCCTGAATGATCACAGGT
GACAGCCTAGCTCAAACAGCTAAAAGCAATAAATAGGCCCTCTCTCAGAC
AAGATGGAAGGTCGGTTCTGGCACCTGGGTTGTTCTCTTCTCTCTACACT
TTGCTATGGTCTACATGTACATGACTACATTCACACACAAGAACCTAAAT
ATTCATGCACGCACACACTACCACCACCACCACCACCACCACCACCACCA
CCACCACACAGACCACACACAGACACCACATAGATGAGAGAGAGAAAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCTCAG
CCCAAGAGTTAATCCTAGAGGTCCCAAGACCCATGTGGTGCCACAATCCA
GACTGAGGTCTTAGGTTCATGTCCCCTTCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCACACTTCCTATAACAGATTT
TTTTCTCATTATCTTTAGATTTTTCCCTACTCTTTTCCCCAACCCCAGAA
TGTGATTAGTGCGTTTTTAATTAGAGTTACTGTAGCCATGGCTGAAATTG
ATTAAATGAGCAGTGGGAACACTAACATGAATTGATTTTATTTTTTTAGT
TGTTGCTTTAATTTGTCAGATATTGTCTTTCTTTCCCTTGGGTGGATTGT
AGAGATTTGGGGTCATTTAGAGCTTGTAAGATATCTTGCTATGATGATTT
TATTCTGCTCTTTCTGTTTTTCTTACCCTCACTTCTCCCACTTCCCAGTC
TTCATCTTTCCTACACTTTCCTTTCCAGGAAGGCAGGGCTACCTGAGCTT
TGAGCTGCAGACCTCCCCTGCAAAGTCTTTATATATGTGATGGGGTCAGC
AAAGGGAATAGTTCATAAGACGTCTCCTGGGCTCTCAGTACAGGTGGGTA
CCTTCCCTCTGGGGCATTCACGGCTATGGGTCACCACCCTGCCTTGCAGG
TCACCTCTGGTCAGAGGATTTATATTTTGAAGGCCCATACCTTCTTATCA
TTAGAGTCTGGTTGGTGTCATTCCTAACAGTTAATGAAAAAACTATGATT
TTTCTCTATAGAGGGTTTAAATAAACTCTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_g17.b1 MSMg01no214_g17.b1 CHROMAT_FILE:
MSMg01no214_g17.b1 PHD_FILE: MSMg01no214_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:44 2005
         (508 letters)



>mm_chr13_68931125_68932032
          Length = 908

 Score =  951 bits (492), Expect = 0.0
 Identities = 504/508 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagaatacgtgggttttttttttccagaacagattattaaataatacgaccaaatcat 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||
Sbjct: 849 atgagaatacgtgggttttttttttccagaacagattattaaataagacgaagaaatcat 790

                                                                       
Query: 61  cttgcttaaaatagaattcagtctgcttaaaatagagcttcggagatggctcagtgggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 cttgcttaaaatagaattcagtctgcttaaaatagagcttcggagatggctcagtgggta 730

                                                                       
Query: 121 tgtctgaacggctcatttgccattcagacatgaggacctgagtatgaattcctacaagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgtctgaacggctcatttgccattcagacatgaggacctgagtatgaattcctacaagac 670

                                                                       
Query: 181 agacagacagacagacagacagacagaagaatctttactctcagtgttcctgtgggaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agacagacagacagacagacagacagaagaatctttactctcagtgttcctgtgggaagg 610

                                                                       
Query: 241 tgggaagcagtgatagaaatcctgaatgatcacaggtgacagcctagctcaaacagctaa 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgggaagcagtgacagaaatcctgaatgatcacaggtgacagcctagctcaaacagctaa 550

                                                                       
Query: 301 aagcaataaataggccctctctcagacaagatggaaggtcggttctggcacctgggttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aagcaataaataggccctctctcagacaagatggaaggtcggttctggcacctgggttgt 490

                                                                       
Query: 361 tctcttctctctacactttgctatggtctacatgtacatgactacattcacacacaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tctcttctctctacactttgctatggtctacatgtacatgactacattcacacacaagaa 430

                                                                       
Query: 421 cctaaatattcatgcacgcacacactaccaccaccaccaccaccaccaccaccaccacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cctaaatattcatgcacgcacacactaccaccaccaccaccaccaccaccaccaccacca 370

                                       
Query: 481 ccacacagaccacacacagacaccacat 508
           ||||||||||||||||||||||||||||
Sbjct: 369 ccacacagaccacacacagacaccacat 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 8
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no214_g17.g1 MSMg01no214_g17.g1 CHROMAT_FILE:
MSMg01no214_g17.g1 PHD_FILE: MSMg01no214_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:44 2005
         (239 letters)



>mm_chr13_68763749_68764387
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcttttccccaaccccagaatgtgattagtgcgtttttaattagagttactgtagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcttttccccaaccccagaatgtgattagtgcgtttttaattagagttactgtagcca 260

                                                                       
Query: 61  tggctgaaattgattaaatgagcagtgggaacactaacatgaattgattttattttttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggctgaaattgattaaatgagcagtgggaacactaacatgaattgattttattttttta 320

                                                                       
Query: 121 gttgttgctttaatttgtcagatattgtctttctttcccttgggtggattgtagagattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgttgctttaatttgtcagatattgtctttctttcccttgggtggattgtagagattt 380

                                                                      
Query: 181 ggggtcatttagagcttgtaagatatcttgctatgatgattttattctgctctttctgt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggtcatttagagcttgtaagatatcttgctatgatgattttattctgctctttctgt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)