BAC Information

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BAC

Clone NameMSMg01-215E16
Chromosome13 (Build37)
Map Location 9,053,744 - 9,054,032
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382722, Adarb2, EG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721
Downstream geneLarp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215E16.T7 (MSMg01no215_e16.b1)MSMg01-215E16.TJ (MSMg01no215_e16.g1)
ACCAG395591AG395592
length733734
length of high quality
(start - end)
153 (428 - 580)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no215_e16.b1 PHD_FILE: MSMg01no215_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:55 2005CHROMAT_FILE: MSMg01no215_e16.g1 PHD_FILE: MSMg01no215_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTAGTCACGATGCTAGCTTTGTCTACAAATAAAATATATATAT
ATATATAACAATAAAACATAACACCCACCAACCTTGTTGATGAAGCTGGA
TTTCCCAACATTTGGATACCCACACAAAAGCAGAGTCCTTGTATTTGGAT
CAATGATTGGCAAGCGGGATAAATGTTGACGTACTGTAAAGAGTTTTTTA
AGTTAAAAATTGAGAATTTAAGATTGGCTTGAAATTTTACTTTCTATGCC
ATTATACTCTAAGTTCATAGTTATTTTAATAACCTTAGATGGCACAAATT
CCTCACTGTAGTTTTTTACGGCCCCAACAGGAGCACTGGTTGTTGACCTT
ATAGCTGTATGTATCCTGCCAGGAACGTGCATCACTGAGCTGTATCCCCA
ACACATTTTTCCTTTGAGACAAAGTCTCACTAAAACAAACTGTGCATTCG
ATCTTTCTCAGGCAGGTCTTGAACTTGTAATCCTCCTACCTTAGCTTCAC
GAGTATCTGGACCACACTTTTGTAATTGCAAAAGTGATGGAGAAAATGAG
GGATGTAATGAAACTGACAACATATACATGAACACACAACACAAGAGTAT
TTTCCAAATATGGCTACACCAAGAATCATGTACTTATCTACCAACCTACA
TCTCAGTTGCTTTAAGTCAAACTGAGACTAAGA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATACCCACTAACATTCCCTCTGCTT
CTGTGACTCTAGAATCCTAATGGCGTGAGAAACTTCATTAACTTGAAACC
TGATAATTTGTAGTTTGTTAAAATCACACTGGGGTTGGGGATTTAGCTCA
GTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCTCAG
CTCTGGAAAAAAAAAAAAAAAGACAAAATAAAATCACACTGGGCTCAAGT
TGTGGTGTGCTTTTGATTTTATAAAAAGACTTTCTTTTTAAAGATTTATT
TATCTTGGGTTGAGTTTCNANTGCAGNTCCACAGATGGTTGTGAGTCACC
AAGTGGTTGCTGGCACCCCAACAAACAAAAATCAGATGAGCGGTCGGTGC
TCTTAACCACTGAGCCATCTTTTCAGCCCATAAAAAGACTTTCTAGGCAA
GGAATGTTCCTGAAGATCAAACTAAGGTCAAAGATCTCTGATATAATATG
CAAATAATTTGTACATCTATTAAGGTAGTTTCTTAGAGATTGCGGTCAAA
GATATTCCTCTACTTAGCAAGCCTGGTTTATGATTACCCTGAAACTAATT
TTGTTGGACCTTTCCCGAATTTCACTATGCCCTCTTCCCAGTTACTGAGA
GCCTATTGGCTTTGCCCCTTGTATTCTTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_e16.g1 MSMg01no215_e16.g1 CHROMAT_FILE:
MSMg01no215_e16.g1 PHD_FILE: MSMg01no215_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:55 2005
         (286 letters)



>mm_chr13_9053727_9054412
          Length = 686

 Score =  501 bits (259), Expect = e-146
 Identities = 278/289 (96%), Gaps = 8/289 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatacccactaacattccctctgcttctgtgactctagaatcctaatggcgtgagaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aatacccactaacattccctctgcttctgtgactctagaatcctaatggcgtgagaaact 247

                                                                       
Query: 61  tcattaacttgaaacctgataatttgtagtttgttaaaatcacactggggttggggattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tcattaacttgaaacctgataatttgtagtttgttaaaatcacactggggttggggattt 187

                                                                       
Query: 121 agctcagtggtagagcgcttgcctagcaagcgcaaggccctgggttcggtcctcagctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 agctcagtggtagagcgcttgcctagcaagcgcaaggccctgggttcggtcctcagctct 127

                                                                       
Query: 181 ggaaaaaaaaaaaaaaa--------gacaaaataaaatcacactgggctcaagttgtggt 232
           |||||||||||||||||        |||||||||||||||||||||||||||||||||||
Sbjct: 126 ggaaaaaaaaaaaaaaaaaaaaaaagacaaaataaaatcacactgggctcaagttgtggt 67

                                                            
Query: 233 gtgcttttgattttataaaaagactttctttttaaagatttatttatct 281
           ||||||||||  | |||||||||||||||||||||||||||||||||||
Sbjct: 66  gtgcttttgagctaataaaaagactttctttttaaagatttatttatct 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)