BAC Information

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BAC

Clone NameMSMg01-215F06
Chromosome13 (Build37)
Map Location 78,010,520 - 78,010,827
singlet/doubletsinglet
Overlap gene1110033M05Rik
Upstream geneMctp1, EG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063, D13Mgi7
Downstream gene1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215F06.T7 (MSMg01no215_f06.b1)MSMg01-215F06.TJ (MSMg01no215_f06.g1)
ACCAG395616AG395617
length627716
length of high quality
(start - end)
313 (37 - 349)617 (77 - 693)
definitionCHROMAT_FILE: MSMg01no215_f06.b1 PHD_FILE: MSMg01no215_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:58 2005CHROMAT_FILE: MSMg01no215_f06.g1 PHD_FILE: MSMg01no215_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCGGAATTCAA
ACATTTCTGAAATGCAGGTGCAATTTTGGCAAAGCCCAGGTGAGCACACC
AAGTCTCAATGCACTACCGTTCATACTGTAATAATTTAATAAAACATTTT
ATTTACAGTTATTTTCTACTGAAGAATAATAGAAATATGGGAAAATGTTA
AAAGCAATTTCTATTTTATGCAAGATGATGGAACAAAATGTAAAAGAATT
CTAATGAATGTAAAAGCCTATTTCTGTTAAAGGTCTCATCTTTAGACTAC
AATGTTGTATTCCAAAATATCAACTTTCTTATAGTCTTTCAAAAACATNA
AGTTCTACTGTAATAAATACCCCACCAAATGAAATTTATCTTTTGAGAAT
GCAGCTGGAATGACACCATATTTTGAATTTCNNACCAANAATATTTATTT
TTCTGTCAAAGTAGCAAAGNNCNTTATTTTGATAATTAAAANCCCCNTTA
ATAAAAATGAGCCTGTTTTAAAAAGAGAAAAAAATGGTACAAACTAAACC
AAAGGATGGTCTCCCCAAAATTTTCCAAAACAATTGAATTTTTTTGAAAA
TTTTGGTCCCCTTGGGAAAAAACACTC
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGATGATATGAACTAATACTT
GTCTTACCATTTAATCCCAAGGATGATATAAACTAATACTTGTTTTACCA
TTTAATCCCAAGGATGATATAAACTAATACTTGTCTTACCGTTTAATCCC
AAGGATGATATAAACTAATACTTGTCTTACCATTTAATCCCAAGGATAAT
ATAAACTAATACTTGTCTTACCATTTAATCCCAAGGATGTTATGAACTAA
TACTTGTCTTACCATTTAATCCCAAGGATGATATAAACTAATACTTGTCT
TACCATTTAATCCCTATTATGATATGAACTAACACTTGTCTTACCATTTA
ATCCCAAGGATGATATGAACTAACACTTGTCTTACCATTTAATCCCAAGG
ATGATATAAACTAGTACTTGTCTTACCATTTAATCCCAAGGATGATATAA
ACTAATACTTGTCTTACCATTTAATCCCAAGGATGATATGAACTAATACT
TGTCTTACCATTTAATCCCAAGGATGATATAAACTAATACTTGTCTTACC
ATTTAATCCCAAGGATGATATAAACTAATACTTGTCTTACCATTTAATCC
CAAGGATGATATAAACTAATACTTGTCTTACCATTTAATCCCCAGGATGA
TATAAACTAATACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_f06.b1 MSMg01no215_f06.b1 CHROMAT_FILE:
MSMg01no215_f06.b1 PHD_FILE: MSMg01no215_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:58 2005
         (313 letters)



>mm_chr13_78010314_78011028
          Length = 715

 Score =  549 bits (284), Expect = e-161
 Identities = 302/308 (98%), Gaps = 2/308 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaaacatttctgaaatgcaggtgcaattttggcaaagcccaggtgagcacaccaa 66
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 514 gaattcaaacatttctgaaatgcaggtgcagttttggcaaagcccaggtgagcacaccaa 455

                                                                       
Query: 67  gtctcaatgcactaccgttcatactgtaataatttaataaaacattttatttac-agtta 125
           ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 454 gtctcaatgcactaaagttcatactgtaataatttaataaaacattttatttacaagtta 395

                                                                       
Query: 126 ttttctactgaagaataatagaaatatgggaaaatgttaaaagcaatttctattttatgc 185
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atttctactgaagaataatagaaatatgggaaaatgttaaaagcaatttctattttatgc 335

                                                                       
Query: 186 -aagatgatggaacaaaatgtaaaagaattctaatgaatgtaaaagcctatttctgttaa 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaagatgatggaacaaaatgtaaaagaattctaatgaatgtaaaagcctatttctgttaa 275

                                                                       
Query: 245 aggtctcatctttagactacaatgttgtattccaaaatatcaactttcttatagtctttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aggtctcatctttagactacaatgttgtattccaaaatatcaactttcttatagtctttc 215

                   
Query: 305 aaaaacat 312
           ||||||||
Sbjct: 214 aaaaacat 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 715
Length adjustment: 9
Effective length of query: 304
Effective length of database: 706
Effective search space:   214624
Effective search space used:   214624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)