BAC Information

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BAC

Clone NameMSMg01-215O09
Chromosome13 (Build37)
Map Location 8,195,706 - 8,195,995
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667611, EG623516, LOC791083, LOC382722
Downstream geneAdarb2, EG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215O09.T7 (MSMg01no215_o09.b1)MSMg01-215O09.TJ (MSMg01no215_o09.g1)
ACCAG395981AG395982
length716725
length of high quality
(start - end)
291 (426 - 716)542 (77 - 618)
definitionCHROMAT_FILE: MSMg01no215_o09.b1 PHD_FILE: MSMg01no215_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:41 2005CHROMAT_FILE: MSMg01no215_o09.g1 PHD_FILE: MSMg01no215_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GTATTAAAGTTGCATAGAACATCACACAGAAAATACAGATCAAGAAAAAT
AATGAATTTATGGCACCGTTTGTAATGGGCTTGCCTCACATGCATTGGGA
TCTAGATTCGACACACAGAACTACAGGGATCACATGTGATAGCAAGTGCA
TGTACTTCCAGTGTTAAAGACATAGACAAGAGGTGATTGAGTGTTAAAGT
CATACGTGGCTGCATGGCAAGAGAGAGGTCATCCTGAATGATATGAGATC
CTTCACAAAAACAAAGAAACGCAGCCTACATTTATAACTACAAACTCAAA
CTTCTTTATTCTCCTCCCTCGCCCCCCATATGTACTATGTTGTCAAAGAC
ATTGCCTCGTCCCAGACTTTATGCATAAGTGAATGAAAATGATACAGCAG
AATTGTTACATAGATTAAATAGGATCAAGTGTGTAGAACTGGTTATGAAA
TAGACCCCGAAATGATGAAGTCAAATGCCATGTTTGCTGTCTTCCTGTCA
CAGACAGGACATTGATTTTAACTCTTGACTTACACCCATGAAAAAGCATT
GACAACCCCAAATCCCAGGGCTCATTCGAGAGCAGCTTCCCATAGCCAGA
GAAGGCAGGCCCTGAGGCCCATCAGCCATACACCATGGGTGACCCGGAGG
TATCAATCTTTTCTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTGATTAGGTTACCTCACTC
AGGATGATATCCTCCAGATCCACCCATTTGCCTATGAATTTCATAAATTC
ATTGTTTTTAATAGCTGAGTATTTCACCAGGAAGGCGGCCGGTTGTCTGG
AGCCGAAAATGGCGCCGCCTCAGAAGCTCTGTGGCTCTCCTCTGTCCCAG
AAACTGCTGGCCTCTGTATTCCACACCCTCACCCGTGCAGCCTGCCCTCC
GCGGATATAGCTCTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAG
AAGTGGATGATCACAGTCAGCTATTGGATGGAACACAGGGCCCCCAATGG
AGGAGCTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAG
GTGGAACAACATTATGAACTAACCAGTACCCCAGAGCTCTTGTCTCTAGC
TGCATATGTATCAAAACATGGCCTAGTCGGCCATCACTGCAAAGAGAGGC
CCATTGAACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGC
CAAAAAGGGGGAGTGGGCGTGTTAGGCGGATTGTCNCCTTCTTTTCCCTT
CTTTTTTCCTCCACCACCTTTACTTTATACCCTCCTCCCTTTCCGATTTT
TTCCCCCCTTATCTTATTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_o09.b1 MSMg01no215_o09.b1 CHROMAT_FILE:
MSMg01no215_o09.b1 PHD_FILE: MSMg01no215_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:41 2005
         (291 letters)



>mm_chr13_8195506_8196196
          Length = 691

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtgaatgaaaatgatacagcagaattgttacatagattaaataggatcaagtgtgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 taagtgaatgaaaatgatacagcagaattgttacatagattaaataggatcaagtgtgta 431

                                                                       
Query: 61  gaactggttatgaaatagaccccgaaatgatgaagtcaaatgccatgtttgctgtcttcc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gaactggttatgaaatagagcccgaaatgatgaagtcaaatgccatgtttgctgtcttcc 371

                                                                       
Query: 121 tgtcacagacaggacattgattttaactcttgacttacacccatgaaaaagcattgacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgtcacagacaggacattgattttaactcttgacttacacccatgaaaaagcattgacaa 311

                                                                       
Query: 181 ccccaaatcccagggctcattcgagagcagcttcccatagccagagaaggcaggccctga 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ccccaaaccccagggctcattcgagagcagcttcccatagccagagaaggcaggccctga 251

                                                             
Query: 241 ggcccatcagccatacaccatgggtgacccggaggtatcaatcttttctc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ggcccatcagccatacaccatgggtgacccggaggtatcaatcttttctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)