BAC Information

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BAC

Clone NameMSMg01-216K21
Chromosome13 (Build37)
Map Location 90,041,770 - 90,042,098
singlet/doubletsinglet
Overlap geneXrcc4
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940
Downstream geneTmem167, LOC100043170, LOC624190, EG435376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216K21.T7 (MSMg01no216_k21.b1)MSMg01-216K21.TJ (MSMg01no216_k21.g1)
ACCAG396470AG396471
length694709
length of high quality
(start - end)
336 (4 - 339)239 (360 - 598)
definitionCHROMAT_FILE: MSMg01no216_k21.b1 PHD_FILE: MSMg01no216_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:46 2005CHROMAT_FILE: MSMg01no216_k21.g1 PHD_FILE: MSMg01no216_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGGATCCGCGGAATTCAAGTGTGTGGTTGCCTTCGAATGATGTTATAAG
TCAATAATAGTGGTTTTCCTCATCTGATAATTTATTTCCCATTCTTGAGT
CCACAAAATTTCATGTGTACTGTTTTATCCTTGAACAGCTCTGAAAGAAA
TTTGAAAATACTTCAGAAGAATTAGATAGCAATGCTTTTACTATTATGTA
TATGTTTATAAAAAAGAAACTTTAAAGTATCTATATATTGGTTAGTTTTG
TAGTATTAATTTAAAGAACTACAGTGGTTTAAAAGACAATGGCCGACAGA
GGCTCATAGTTGAATGCCTAGACTCTTGTTTTTGGACAGCTTACGCAAAG
ATTAGGAGGTCTGACCTCGTTGGTGGAGATATGCCACTGGGGGTAGGCTG
TGAGTTTTCCAAAGACCAACAGTAGGCCCAGTTTCTTTTTTTGTTTCTTT
TTGTTTTTGTTTTTGTTTGTCTGCTTGCCTGTCTACCTCCACATGCTGTC
AGGCCCAGCCTTCCTTCCTCCCTCCTTCCCTTCCTCCTTCTCTTTGCCTT
CACTTGTAGAATAGGATGTAAGCTGTAAGTTCACACCATTGTTCTAGCCA
GCAGAAGACTTTCTGAAACGGTAAGCAAGCCAGTAAAAAGACTTTAGAAG
TTAAGTAGGTCATGGCATCTGTTCACANGTATAGAAAAGTAACT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACA
ATACAACATCTATTACTGAGTGTTCCAAAGTCTCTCGCTCTGCGCACATT
GTTTAGCCGTGGGTCTCTATATGTGTCACCATGCAGGAGGAAGCTTCTCT
AATGGGGCCAAGCAAAGCACGGTTCTAAGAGAATAGTGGTAGGAGTCATT
TTACAGTTATGCTCTTTTAGCAGAACAATGGAATTTGGTCTTCCCCAAGT
ACCTTAAATATCTGTTCTTAGGTTCCTCACCACCTGAGCAGCGTGTGATA
GGTTGTAATCCCTATATCCAACTAGATATTGTTGGTTAGTCCCATATGCT
ATGTGCTGCTACTGCACCAGCACATGGGAACTCAAATTGCATGTTTCTCT
ACCACCATGGATATGTGGAATATTATGTGTGTGTGTGTGTATATATATAT
ATATATATATATATACATACACATATATATATTTATATATAAATATATAT
GTTTATACACGTATATATGTAAAACCTATTGTTTATACACATATATATGT
AAAACCTATTTGTTTCAGAACTATTCATTCTATTAAAAAAACCAAAAACA
AACAAAAAACCCCACACAGACCAAACTTAATGGGGGTTGCTTGTTTTTCT
ACTAATCTGGACATAACATTCAGACCCTTACAATTCTGTCATGGTTTTTC
TTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_k21.b1 MSMg01no216_k21.b1 CHROMAT_FILE:
MSMg01no216_k21.b1 PHD_FILE: MSMg01no216_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:46 2005
         (336 letters)



>mm_chr13_90041563_90042298
          Length = 736

 Score =  611 bits (316), Expect = e-179
 Identities = 326/332 (98%), Gaps = 6/332 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggaattcaagtgtgtggttgccttcgaatgatgttataagtcaataatagtggttttcct 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattcaagtgtgtggttgccttcgaatgatgttataagtcaataatagtggttttcct 267

                                                                       
Query: 68  catctgataattta---tttcccattcttgagtccacaaaatttcatgtgtactgtttta 124
           ||||||||||||||   |||   |||||||||||||||||||||||||||||||||||||
Sbjct: 268 catctgataatttacttttt---attcttgagtccacaaaatttcatgtgtactgtttta 324

                                                                       
Query: 125 tccttgaacagctctgaaagaaatttgaaaatacttcagaagaattagatagcaatgctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccttgaacagctctgaaagaaatttgaaaatacttcagaagaattagatagcaatgctt 384

                                                                       
Query: 185 ttactattatgtatatgtttataaaaaagaaactttaaagtatctatatattggttagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttactattatgtatatgtttataaaaaagaaactttaaagtatctatatattggttagtt 444

                                                                       
Query: 245 ttgtagtattaatttaaagaactacagtggtttaaaagacaatggccgacagaggctcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgtagtattaatttaaagaactacagtggtttaaaagacaatggccgacagaggctcat 504

                                           
Query: 305 agttgaatgcctagactcttgtttttggacag 336
           ||||||||||||||||||||||||||||||||
Sbjct: 505 agttgaatgcctagactcttgtttttggacag 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)