BAC Information

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BAC

Clone NameMSMg01-217H12
Chromosome13 (Build37)
Map Location 28,578,011 - 28,578,297
singlet/doubletsinglet
Overlap genenone
Upstream genePrl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399
Downstream genePpia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217H12.T7 (MSMg01no217_h12.b1)MSMg01-217H12.TJ (MSMg01no217_h12.g1)
ACCAG396986AG396987
length704788
length of high quality
(start - end)
313 (50 - 362)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no217_h12.b1 PHD_FILE: MSMg01no217_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:02 2005CHROMAT_FILE: MSMg01no217_h12.g1 PHD_FILE: MSMg01no217_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTGTTTAGCTCTGTCTCCCATTTTATAATAGGGTTATTTT
GTTCTCTGGAGTCAAACTTCTTGAGCTCTTTGTATATTTTGGATATTAGC
CCTCTATCAGATGTAGGACTGGTAAAGATCTGTTCCCAGTCTGTGGGTTG
CCATTTTGTGCTATTGGTAGTATCCTTTGCCTTACAGAGCTTTTCAATTT
TATGAGGTACTATTTGTCAATTGTTGATGTTAAAGCATAAGCCATTGGTA
TTCTGTTCAAAAAGTTTTTCCTATTGCCCAAGCATTTGAGGCACTTCACC
ACTTTCTCTTCTATTTTTTTCACCGCCTNTCGNCCTATGTGGAGGTTCTT
GATCCACTTGGACTTGAGCCCCCCCCCACAAAATAAAAATAGATCAATTT
GCGTTCTTCTACTTGATGACCACTCGTTGAAACAGCACTCATTTGCTGAA
TACCCTGCCTTTTTTTCCACTATATGGTTTTATCTTCTTTTTCCTATATC
TTGAGACCATAGGTGTGCTGGCCTTTTTTCTTGGCTTTTCTTCTCCACCC
CTTTTGCTTTTTTTGTCCCCGCTCTTTTTCCATTCCCCTCTTCTTCCTTA
TTTGTTCTTCCCCTTATCTTTTTTAGTCACTCCTGCGTTCTCTCTTTTCT
TTTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTCAACTTTCGTATTTGATTTCCAGAC
ATTTCTTATAGCTTAATATCTCAGTGAAAGCCTGTAGATATTCACTTAAC
AGTATTTTTGTTTATTCATGGGACATAGCTCTTTAGAATTCTTTGACAGC
TCAAATTTCAGGTCATATTGTGGCTTTTTCTTGAAAATTAGTATTTTTCT
ATACCTGTGTAAACTAAGTGATTTTGGATGTTTTTATTGACCCTATGAAT
ATTCATTGTATGGAGCTGGTAGGGAGATTTCTATTATACTAGTATTGCAG
AATGCCCCCCCTTCTTTTTTCACCCCCCCCCCACACTTGCTTTAGGCTGC
TTAGTCTCAGTTCGCGCCTCTCTAACCGTGCTATCCTGGATGGGCTCTCC
TGCACATGTGTAAATTTGGGGTTTAGAATGATATATATGTATGTGTATAT
ATATATATATATATATACACATATATATCCTTATACCCTACCTCTTTCTT
TTCCTTTCTTTTACCTACTCCTTTCCTTCTTTCCCTCCGCATGCTTTACC
TCTTCCTTTTTTCTTTTTTTTCTTTTTCTATTCTCTCTCAGTTTTCTTTA
ACCTTCCTTTTTTCTTTTTGTCTCTTTTTTCCATTCCCTTACCTTATCCT
CCCCTTATTTCTCATTCTTCTTTTCCCATTTTGTTTATCCCTTCCCATCT
TCCCTCTCTCTCTTTACCCCCTTAACTTTCAGCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_h12.g1 MSMg01no217_h12.g1 CHROMAT_FILE:
MSMg01no217_h12.g1 PHD_FILE: MSMg01no217_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:02 2005
         (291 letters)



>mm_chr13_28577811_28578497
          Length = 687

 Score =  439 bits (227), Expect = e-128
 Identities = 275/293 (93%), Gaps = 8/293 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcaactttcgtatttgatttccagacatttcttatagcttaatatctcagtgaaagc 60
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 487 atttcaacttttgtatttgatttccagacatttcttatagcttaatatct-agtgaaagc 429

                                                                       
Query: 61  ctgtagatattcacttaacagtatttttgtttattcatgggacatagctctttagaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctgtagatattcacttaacagtatttttgtttattcatgggacatagctctttagaattc 369

                                                                       
Query: 121 tttgacagctcaaatttcaggtcatattgtggctttttcttgaaaattagtatttttcta 180
           |||||||||||||  |||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 368 tttgacagctcaaccttcaggtcatattgtggctttttcttgaa----agtatttttcta 313

                                                                       
Query: 181 tacctgtgtaaactaagtgattttggatgtttttattgaccctatgaatattcattgtat 240
           ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 312 tacctttgtatactaagtgattttggatgtttttattgaccccatgaatattcattgtat 253

                                                                
Query: 241 ggagctggtagggagatttctattatactagtattgcagaat-gcc-ccccct 291
           ||| | | ||||||||||||||||||||||||| || ||||| ||| ||||||
Sbjct: 252 ggatcagatagggagatttctattatactagta-tggagaatggccaccccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 687
Length adjustment: 9
Effective length of query: 282
Effective length of database: 678
Effective search space:   191196
Effective search space used:   191196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)