Query= MSMg01no218_e14.b1 MSMg01no218_e14.b1 CHROMAT_FILE:
MSMg01no218_e14.b1 PHD_FILE: MSMg01no218_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:15 2005
(278 letters)
>mm_chr13_47635485_47636162
Length = 678
Score = 522 bits (270), Expect = e-153
Identities = 273/274 (99%)
Strand = Plus / Plus
Query: 5 gaattctttacagtgggtagctactattgcctggtcagtagctcagggcaacgagagcag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttacagtgggtagctactattgcctggtcagtagctcagggcaacgagagcag 264
Query: 65 aagaagatggacagcacaaatccacttcccccctctgacttataaagtggtttgcagaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaagatggacagcacaaatccacttcccccctctgacttataaagtggtttgcagaaa 324
Query: 125 gcatttctgatgacctagtttaaaagtcccagttaagtgatgtcttatttcattccctta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcatttctgatgacctagtttaaaagtcccagttaagtgatgtcttatttcattccctta 384
Query: 185 tatgattcgtacttttcgtttgactatttttgctttgtgtggcttaagtgcctcctcctt 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatgattcgtactttttgtttgactatttttgctttgtgtggcttaagtgcctcctcctt 444
Query: 245 tctattgatcccacttggagaggcattttatttc 278
||||||||||||||||||||||||||||||||||
Sbjct: 445 tctattgatcccacttggagaggcattttatttc 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no218_e14.g1 MSMg01no218_e14.g1 CHROMAT_FILE:
MSMg01no218_e14.g1 PHD_FILE: MSMg01no218_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:15 2005
(283 letters)
>mm_chr13_47800549_47801231
Length = 683
Score = 509 bits (263), Expect = e-148
Identities = 278/287 (96%), Gaps = 8/287 (2%)
Strand = Plus / Minus
Query: 1 ttggtaagggagctatatcatggaaaaagaaaaatatctgtataaataagggagagtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttggtaagggagctatatcatggaaaaagaaaaatatctgtataaataagggagagtggg 424
Query: 61 tggaaatctgccataaagaaggagagaaagggctctccccacctatcaaagttaaggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tggaaatctgccataaagaaggagagaaagggctctccccacctatcaaagttaaggagg 364
Query: 121 ctctgctgagacttttgcagatatttcaaatacattcagaggcaaagagtctcagaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctctgctgagacttttgcagatatttcaaatacattcagaggcaaagagtctcagaacag 304
Query: 181 acacatccaaacgccagaagtttttagccttagtacattggtatttaacaagagaggcct 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 303 acacatccaaacgccagaagtttttagccctagtacattggtatttaacaagagaggcct 244
Query: 241 gggga----ttttttgacatttaggagggatttatgggcataccctg 283
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 243 ggggagcac----ttgacatttaggagggatttatgggcataccctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
