BAC Information

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BAC

Clone NameMSMg01-231E11
Chromosome13 (Build37)
Map Location 31,073,652 - 31,073,960
singlet/doubletsinglet
Overlap genenone
Upstream geneE2f3, Mboat1, Agtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743
Downstream geneLOC100041257, LOC100041266, G630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, Gmds, LOC666212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231E11.T7 (MSMg01no231_e11.b1)MSMg01-231E11.TJ (MSMg01no231_e11.g1)
ACCAG398147AG398148
length727750
length of high quality
(start - end)
314 (45 - 358)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no231_e11.b1 PHD_FILE: MSMg01no231_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:31 2005CHROMAT_FILE: MSMg01no231_e11.g1 PHD_FILE: MSMg01no231_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAAGTATTAAACTCTCCATGTAGTTTGGTTAGGTCCCCTTGTGTG
TTTCAAACCAGGGTAAACATACTGCACACCCTAGTGGCCAGTCCAGGGAT
GCACCTTCTCCATGGGGCTATCTTCCATGGTGGCCACCAAAATATGCTAC
AAAGCCCTAGCAGCCATTTTGACCTTTTGTGAAGGTGGAAAACATCAACT
TGCTATTCTTTCTGGGTAAGGAATTCATCTCCAGGTCATAAAGACTGAGA
ATTACCTTCACACCCTCTATTTCCAAAAGATATCATTTCAATATTGAGGC
AAGAAAATCTATTTTTCACTNAAACCTAGCCGACACTATATAAGCTTGAA
TTATTGGTAAACAAGACCCCCCCACAGAGGGATGGAGAGAGAGAAGGGAA
GGCAAGAAGAAGTCTCAAGTTTCCCTCTCACTCTCCTTGCATCTCCTTTC
TTTCCCCTGTCCTCTTTCCTTCCGCTTCTTATCCTAAGCACAGCCTCTTC
TTCCTAATATCAACAGCCCTTTCTTTTCCAACCCCTAACATATGCCCGTG
ATTGCTCTTTCCAGCATTTCATTCTTCCCTTACTTCTCCCCGTTTTCCTT
CCCCTTTTCTTGCCCCCCCCTTTTTTTTTCACCTTTCGCTTTCCTTTATA
CATGCTCTTTGCGCGCCCCCTTTCCCG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGAAGATGTCAAGGAAGGATT
GTATTAGTCAAGGACACCATAAGACCAGGGCACACAAAATCAACTAGCCA
GGGTTCACAGGAGCTCACAGAGACTGAACTGACAGCCAGGGAGCCTGTAT
GTGTCTGAGCTAGGTCCTCTGAATATATGTTATGGTTGTGTAGCTTGGAC
TTCTTGTGGAGCTATTAACAGTCAGAAAGGGGCTAACTCTGACTCTTTTG
CCTGCCCTTGGGACCCTTTTCTTCTTACTGGGTTGCCTCTTCCAGCATTG
ATATAAGCATATTTTTTTGCCCTNACAACCCCCCTATGCCATGTTTGGTT
GATATTCCTGGGAGACCCGCCCCCTTCTGCAAAATATTTATTCCGGGGAA
TATCATTCCACTCATTAAAACGAATATCCTGAAATTTGTAGTCAAATGAA
TGAGGCTTGACTAAATCATTCTATCTACCTATAATTCCCATCTCCCATGA
GGAATGTTCAGTGTTCCCTGTTTATTGCGCTTGTCCACTCTCCACTCTGT
TTGCATGTGCCCTTCTTTCTTTTTTCCTACCCCTTACCCTTTTTTTTTTC
CCTTTTTTTCTTCCTTCTTCTTCCTTTTTCCTCGTTCTTTTTCGCTCTTT
TTTCCCGCCATTTTCCCTCCATTTTCCCCTCTCCCTTTTTTCCCTCCCTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_e11.b1 MSMg01no231_e11.b1 CHROMAT_FILE:
MSMg01no231_e11.b1 PHD_FILE: MSMg01no231_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:31 2005
         (314 letters)



>mm_chr13_31073448_31074161
          Length = 714

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaagtattaaactctccatgtagtttggttaggtccccttgtgtgtttcaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaagtattaaactctccatgtagtttggttaggtccccttgtgtgtttcaaac 264

                                                                       
Query: 65  cagggtaaacatactgcacaccctagtggccagtccagggatgcaccttctccatggggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagggtaaacatactgcacaccctagtggccagtccagggatgcaccttctccatggggc 324

                                                                       
Query: 125 tatcttccatggtggccaccaaaatatgctacaaagccctagcagccattttgacctttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatcttccatggtggccaccaaaatatgctacaaagccctagcagccattttgacctttt 384

                                                                       
Query: 185 gtgaaggtggaaaacatcaacttgctattctttctgggtaaggaattcatctccaggtca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgaaggtggaaaacatcaacttgctattctttctgggtaaggaattcatctccaggtca 444

                                                                       
Query: 245 taaagactgagaattaccttcacaccctctatttccaaaagatatcatttcaatattgag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaagactgagaattaccttcacaccctctatttccaaaagatatcatttcaatattgag 504

                    
Query: 305 gcaagaaaa 313
           || ||||||
Sbjct: 505 gcgagaaaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)