BAC Information

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BAC

Clone NameMSMg01-231H19
Chromosome13 (Build37)
Map Location 67,850,246 - 67,850,902
singlet/doubletsinglet
Overlap geneZfp85-rs1
Upstream geneLOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137
Downstream geneLOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231H19.T7 (MSMg01no231_h19.b1)MSMg01-231H19.TJ (MSMg01no231_h19.g1)
ACCAG398288AG398289
length706709
length of high quality
(start - end)		661 (46 - 706)628 (77 - 704)
definitionCHROMAT_FILE: MSMg01no231_h19.b1 PHD_FILE: MSMg01no231_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:47 2005CHROMAT_FILE: MSMg01no231_h19.g1 PHD_FILE: MSMg01no231_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGATGGTTAGAGAGTGTTGTGCCAACACTAAAGGCCTTGCCAC
ATTCTTCACATTTGTAGGGTTTCTCTCCAGTATGTACTCTTCGGTGAACA
ATAAGTCCTGAACAATTAGTAAAAGGTTTACCACATTCTTCACATTTGTA
GCGTTTCTCTCCAGTGTGGATTCTTTGATGCTTACCCAGATATGAAGAAC
AGTTAAAAGCTTTGCCACACACTTCACATTTGTAGGGTTTCTCGCCAGTA
TGAATTCTTTGGTGCTGTTTAAAGCTGGAAGAATAATTAAATGATTTGCC
ACATTCTTCACATTTATAGGATCTCTCTCCAGTATGTATTCTTTGATGCT
GAATAAGGACTGAGTTCCTATCAAAGGCCTTCCCACACTCTTTACATTTA
TGGGGTTTTGATCCTGTTAAAAAAGTATTGAAGTATTAATAAAAGCATAC
CATTATATACTTTATACTATACATTAAAATATACTTTATATTTATACTGC
TCATTCTTAATAGGAATACAGTGTTATGGTTTTTGGTTTTTTTTTTTTTA
TTTTTGTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTG
TCCTGGAACTCACTTTGTAAACCAGGCTGGCCTTGAACTCAGAAATCCGC
ATGTCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGAGCTATACAGAG
AAACCCTGTCTCAAAAAACCAAACAAAACAAATCAAATCAAAACAAACAA
AAAACCAAAAGAACAAATAACATATTTTGTGTATCTCTGAGGTTTTTGAA
GACCATCTATTCTGTCTACAGTCCATCTGTATAGGCAAATGTTGCTTGTA
TCTTGCTATCTACTATCTGTTTAACTTTGAAATTTTCTACAGGAAGCTAA
ATAAAGTTTATTTCTGTAATTGACTGAACTATAACCTAGCATGACCACAA
GGTTTTATTGACTAGTATTGCATTGCTTTAACTATCATTAACAGTTTGCG
GTAGCAGCTTTCAAAGACTAGAACTTCACATTGCATACTAAATAAGTTGT
ATAGGTACAATACCTTGAACAAAAGTTAAAACATGTATATATATATACAT
ATATAAATGTGTGTGTGTGTGTAAAAAACCCTTAAATTTATATCAAATAT
ACAAAATTCAAATATAAAAATATTTGGCTTGTTGATATTCTTAAGTCATA
AAGTACATTCAATAATCTAACCTTTTATCCTATCATTCCTATATCCCCTC
TCTTTTCTTTTCATCCCTTCTCCCCCTTTCCTTCCTAATGCTAGATACTG
GAGAANAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_h19.b1 MSMg01no231_h19.b1 CHROMAT_FILE:
MSMg01no231_h19.b1 PHD_FILE: MSMg01no231_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:47 2005
         (661 letters)



>mm_chr13_67850042_67851102
          Length = 1061

 Score = 1263 bits (653), Expect = 0.0
 Identities = 656/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgatggttagagagtgttgtgccaacactaaaggccttgccacattcttcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgatggttagagagtgttgtgccaacactaaaggccttgccacattcttcac 264

                                                                       
Query: 65  atttgtagggtttctctccagtatgtactcttcggtgaacaataagtcctgaacaattag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttgtagggtttctctccagtatgtactcttcggtgaacaataagtcctgaacaattag 324

                                                                       
Query: 125 taaaaggtttaccacattcttcacatttgtagcgtttctctccagtgtggattctttgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaaggtttaccacattcttcacatttgtagcgtttctctccagtgtggattctttgat 384

                                                                       
Query: 185 gcttacccagatatgaagaacagttaaaagctttgccacacacttcacatttgtagggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcttacccagatatgaagaacagttaaaagctttgccacacacttcacatttgtagggtt 444

                                                                       
Query: 245 tctcgccagtatgaattctttggtgctgtttaaagctggaagaataattaaatgatttgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctcgccagtatgaattctttggtgctgtttaaagctggaagaataattaaatgatttgc 504

                                                                       
Query: 305 cacattcttcacatttataggatctctctccagtatgtattctttgatgctgaataagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacattcttcacatttataggatctctctccagtatgtattctttgatgctgaataagga 564

                                                                       
Query: 365 ctgagttcctatcaaaggccttcccacactctttacatttatggggttttgatcctgtta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgagttcctatcaaaggccttcccacactctttacatttatggggttttgatcctgtta 624

                                                                       
Query: 425 aaaaagtattgaagtattaataaaagcataccattatatactttatactatacattaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaaagtattgaagtattaataaaagcataccattatatactttatactatacattaaaa 684

                                                                       
Query: 485 tatactttatatttatactgctcattcttaataggaatacagtgttatggtttttggttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatactttatatttatactgctcattcttaataggaatacagtgttatggtttttggttt 744

                                                                       
Query: 545 ttttttttttatttttgtttttggttttttgagacagggtttctctgtatagccctggct 604
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttttttttttatttttgtttttgtttttttgagacagggtttctctgtatagccctggct 804

                                                                    
Query: 605 gtcctggaactcactttgtaaaccaggctggccttgaactcagaaatccgcatgtct 661
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtcctggaactcactttgtaaaccaggctggccttgaactcagaaatccgcatgtct 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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