BAC Information

Click to search

BAC

Clone NameMSMg01-231K01
Chromosome13 (Build37)
Map Location 82,081,405 - 82,081,693
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC238756, LOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231K01.T7 (MSMg01no231_k01.b1)MSMg01-231K01.TJ (MSMg01no231_k01.g1)
ACCAG398384AG398385
length720724
length of high quality
(start - end)
321 (46 - 366)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no231_k01.b1 PHD_FILE: MSMg01no231_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:58 2005CHROMAT_FILE: MSMg01no231_k01.g1 PHD_FILE: MSMg01no231_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCTGCATGATAACTGCCATTTGAACCTGTACCATTTGTTGAAAA
TGCTGTTTTTTTCCCCCACTGGATGGTCTTAGCTCCCTTGTCAAAGATCA
AGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGATCTACTTGCCTTTCACTGTACCATTACGATGCAGTTTTTATCATAAT
TGCTCTGCAGTACAGCTTGAGGTCAGGGATGGTGGTTCCACCAGAAGTTC
TTTTATTGTTGAGAATAGTTTTTATTATCCTAGGTTTTTTGTTATTACAG
ATGAATTTACAATTTGTTCTTTTCCCCTCCGCCAAGAATTGAGTTGGAAT
TTTGATGGGAATTGCATTGAACCTGTAGATTGATTTTGGCAAGATGGCCA
TTTTTACTTTATTAATCCTGCCAATCCATGAGCATGGGAGATCTGACCAT
CTGTACTGGTTAGTTTTGTGTCAACTTGACACAGTTGGAGTTATCACAGA
GAAAGGACCTTCAGCTGAGGAAATGCCTCCATAAGATCCAACTGCAAGGC
ATTTTCTCAACTAGTGATCAAGGGGTAAAGGCCCCTTGCGGGTGGGACCA
TCTCTGGGCTGGCAGTCTTGCGTTCCTATAGAGAGCAGGCTGAGCAAGCC
AGGATAACCAAGCCAGTAAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTTTACCGGATAATTAGAATCCTAG
ACCCTGGGAATGTCAGAGCTGTGAGGCCCATTGTTGAACATCCTTCACTT
TATGGATGTAGAAATCAGAAACATGGAGTTGCTAAGCAAATTTTCCAGAA
CTTAATGACTAGAACGTGGCAGGTACGAGGCAAGAACCGTCTTCTTCAGA
ATCTCTTCTCAAACTAGAAATGAGAACAAAGTCACCCAGAGAGCTGTAAG
AAGGTGGCTGGGTCCATTTCCAAAGCCCTTGGTTCTTTTTGTCTAAGATA
GGACTAAGGAATTTGTATTTGTACCCCGCCCCACCCAGTGGTTTCCAAGG
TATGATGTCCTTGATGGCACCGCCACTGTCAGAATGTAAGCATTTTTCTG
ATGGCACTTTTTATGTGAACAAAGCAACCTCATCCCAGAGTCACCACATT
CCTTTAGCATCTTCTCATCAGCTCTCTGAAAGGGTTGGAGTGACATCCAC
GATGACAGTTGGGAAGGTAGGGCACTCATGTAAGGGACTCCTGAGGAGTC
ACAGTCCTCCCAATCATCAGTGACTCTTAACATAGTTTCAGCTAAGTGTC
CCTTACTAGGAGGTCTGCTGCCCTTCCCCATGAGTTTACCACGGCCACCC
CTTTACCGGTAGTTTGAGCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_k01.g1 MSMg01no231_k01.g1 CHROMAT_FILE:
MSMg01no231_k01.g1 PHD_FILE: MSMg01no231_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:58 2005
         (291 letters)



>mm_chr13_82081312_82082002
          Length = 691

 Score =  551 bits (285), Expect = e-161
 Identities = 289/291 (99%), Gaps = 2/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttaccggataattagaatcctagaccctgggaatgtcagagctgtgaggcccattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcttttaccggataattagaatcctagaccctgggaatgtcagagctgtgaggcccattg 323

                                                                       
Query: 61  ttgaacatccttcactttatggatgtagaaatcagaaacatggagttgctaagcaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttgaacatccttcactttatggatgtagaaatcagaaacatggagttgctaagcaaattt 263

                                                                       
Query: 121 tccagaacttaatgactagaacgtggcaggtacgaggcaagaaccgtcttcttcagaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tccagaacttaatgactagaacgtggcaggtacgaggcaagaaccgtcttcttcagaatc 203

                                                                       
Query: 181 tcttctcaaactagaaatgagaacaaagtcacccagagagctgtaagaaggtggctgggt 240
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 202 tcttctcaaactagaaatgagaac--agtcacccagagagctgtaagaaggtggctgggt 145

                                                              
Query: 241 ccatttccaaagcccttggttctttttgtctaagataggactaaggaattt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ccatttccaaagcccttggttctttttgtctaagataggactaaggaattt 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)