BAC Information

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BAC

Clone NameMSMg01-232E23
Chromosome13 (Build37)
Map Location 113,472,642 - 113,472,969
singlet/doubletsinglet
Overlap gene9130023D20Rik
Upstream geneLOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4
Downstream genePpap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232E23.T7 (MSMg01no232_e23.b1)MSMg01-232E23.TJ (MSMg01no232_e23.g1)
ACCAG398858AG398859
length756762
length of high quality
(start - end)
331 (46 - 376)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no232_e23.b1 PHD_FILE: MSMg01no232_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:46 2005CHROMAT_FILE: MSMg01no232_e23.g1 PHD_FILE: MSMg01no232_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAGGTAAGCTGAATCTTAGAGAGGTATGGTCAATAGGAGAAAAA
AGTGTTTCAAAGAACAGAAGACTAGGCATGTAACTCACAGGCTCAGCATG
TGTAAAGCCTTGGATTCACTCCCTGTACACACACACACACACACACACAC
ACACACACACACACACACACACACCAGAACACATGGGAGTGGAGGGAGAA
GAGAATCAAAAAGAAAAAGTATGAGATATATTTTAAAACACATGTTGGTC
AGTGTATGGAGATTTTCACATGCTAACACAGGGTTTAATCTAAAGGAAGG
AAGCCAGTGCTTCTGCTTCTTTGACTGATTACCTCTCAAAGCTCTAATTT
TTAAATGTAAGGAATCCCACACCTCTCAGAACAGGAGTTCTCTCCTGTGA
TCTCATTCCATCGGCCAGTTCGTGCAACTTGCATCCATACAGATACTGGC
TATACTGACGTATGCTGTCCAGACTGAAAGCCCGGCTGGTGTATCAAACT
CTTCCCCACTGTGCCTCCCTTATCCCACATGTTGGACTTGAGTGCCCACA
TGAGCCTCACCAATCCTCAAACACTACACGTGTGCACACAGCTTTTTCAG
GACCTTTGCTATTCATTTCAGGTAAAACAAACTCTACAGACCTTTTTTCC
TGCACAGCTTATTTGTCACCTCTTTTAGCTCTTTCCTAAGCTGTCCCTTT
CTCAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCCATAGGTTCATACATATGTAA
GCTTAATCCCCAGTTGATGAGGAAAGGGTTAGGAGGTGTGGCCTGTCACA
GGAGGTGTATCACAGGAGGTGGGCTTTGAGGACCAGTGTATGTGTGTCTC
CCCTCCTCTCTTGCCCACCTCTCTCCCTTCCCCCTCCCTTTCTTGCTGCT
GTGCGTATGGATCAGGATGTAAAGTTCTCAGCTGCTGCTTCAGTGCCATG
AGTGTGTGCTTCCCACCATGGTGATAATGTACTGACCCTCTGAAAGTGGA
AGCAAGCTCCCAGATATATTCCTGCTCTCTCACCCCCAGTTGCCTTGGCC
AAGGTGTCTCTTCATAGCACCCCACTTATAAGACAAGAGACAAGAGACAG
GTAATATATAACAGATAATGATTGCTGACTGATTGTGGACTGATAGACCC
TCTCAAGGTATTATTCTCACATCATTAACAGGAATCAGGTGGGTGGGAAT
CAGAACTGCGCCCTTTCTCTTCTTTCCCACACTATCAGATGTCTTTGAAG
TCTCAACTTAAAAACTACCCACCTCTTCTCTCTTCCCCAGGGCAAGGATT
TGTTCTTTTCTTTTCTTCTTTTGTAAATGTAAACTAGACTTCTCTTTGAG
TGCATACATATGTGAACACATAACGACTGACAGATTTGACCACACACACC
CCACCACCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_e23.b1 MSMg01no232_e23.b1 CHROMAT_FILE:
MSMg01no232_e23.b1 PHD_FILE: MSMg01no232_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:46 2005
         (331 letters)



>mm_chr13_113472263_113472997
          Length = 735

 Score =  580 bits (300), Expect = e-170
 Identities = 321/332 (96%), Gaps = 8/332 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcataggtaagctgaatcttagagaggtatggtcaataggagaaaaaagtgtttc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ggaattcataggtaagctgaatcttagagaggtatggtcaataggagaaaaaagtgtttc 648

                                                                       
Query: 64  aaagaacagaagactaggcatgtaactcacaggctcagcatgtgtaaagccttggattca 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aaagaacagaagactagggatgtaactcacaggctcagcatgtgtaaagccttggattca 588

                                                                       
Query: 124 ctccctgtacacacacacacacacacacacacacacacacacacacacacacacaccaga 183
           ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctccctgt----acacacacacacacacacacacacacacacacacacacacacaccaga 532

                                                                       
Query: 184 acacatgggagtggagggaga----agagaatcaaaaagaaaaagtatgagatatatttt 239
           |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 531 acacatgggagtggagggagaagagagagaatcaaaaagaaaaagtatgagatatatttt 472

                                                                       
Query: 240 aaaacacatgttggtcagtgtatggagattttcacatgctaacacagggtttaatctaaa 299
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaaacacacgttggtcagtgtatggagattttcacatgctaacacagggtttaatctaaa 412

                                           
Query: 300 ggaaggaagccagtgcttctgcttctttgact 331
           |||||||||||||||| |||||||||||||||
Sbjct: 411 ggaaggaagccagtgcatctgcttctttgact 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 735
Length adjustment: 9
Effective length of query: 322
Effective length of database: 726
Effective search space:   233772
Effective search space used:   233772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)