BAC Information

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BAC

Clone NameMSMg01-233C18
Chromosome13 (Build37)
Map Location 76,446,027 - 76,446,316
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneMctp1, LOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233C18.T7 (MSMg01no233_c18.b1)MSMg01-233C18.TJ (MSMg01no233_c18.g1)
ACCAG399457AG399458
length746747
length of high quality
(start - end)
323 (40 - 362)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no233_c18.b1 PHD_FILE: MSMg01no233_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:50 2005CHROMAT_FILE: MSMg01no233_c18.g1 PHD_FILE: MSMg01no233_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGGCCTATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCA
ACATCAAAGTAAATGGTGAGAAGCTGGAGGCAATCCCACTAAAATCAGGG
ACTAAACATGCTGTCCACTCTCTCCCTACCTATTCAACATTGTACTTGAA
GTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGGGGATACAAAT
TGGAAAGGAAGAAGTCAAAATATCACTATTTGCAGATAATATGATACTGT
ATATAAGTGACCCTAAAAATTCCACAAGAAATCTCCTAAACCTAATAAAC
AGCTTCGGTGAATTAGCTGGATATCAAATTAACTCAAACAAGTCAATGGC
CTTTCTCTACACCAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAA
CACCGTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTA
ACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAA
AGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGA
TTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTAC
AGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATT
AGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAACCTAGGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAATTTAGTGAGCACAGAGCCACAGTGCTC
TCATACTGATTCTGATTCTGGTCCCCCTAGAACACAAGGGACACTGTAAA
TACTCAGTTTCTACTAGAGGAACACACATGTTGGGCTAATTCACTTGGTG
TTTGAGTACTGTGACAGCCATTATTTCTTGATACACTCCAAATACATACA
TTAAAATTACTATCTTATATCTCAAAAGGACAAAGAACTTAATATCAAAA
AACCTACAAAGAACATAATTGGAGAAACAGGACCAGTGCTTCCAGTTGAA
TAGCTAACTTATAGTACACACCCTTACCTTGATTTGTTAATTTATTCATT
CCCTCAAGTGTTAATGAAACATCGAGTCTCAGAGATGGATGAATCTACAC
TCAGGTCAGTGGCAGGTCAGATTCTTGTGCTCAGACAGGGTTCTCAGGCC
TCTCTTGGGCTGATAGCTGGGCTGCCTCTTGTATGTTGCTTTATTCCAGC
CAGATCATTCTTCATGGTGCCTACATTTCCCTAGTATGCTCATAGCTCCA
AGTCCAGGGAGCAGGAGCAAAGGTCACTCTTATTTCTCCTGAAAATTTTT
TGAGTGAGATAGAACCAGATCAGCTTGAGTCATATGCTCATATCCATCAG
AATGTTACAGGCAGGCAACAAAACAGGTTGCAGTCACACCCAGTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_c18.g1 MSMg01no233_c18.g1 CHROMAT_FILE:
MSMg01no233_c18.g1 PHD_FILE: MSMg01no233_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:50 2005
         (290 letters)



>mm_chr13_76445827_76446516
          Length = 690

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatttagtgagcacagagccacagtgctctcatactgattctgattctggtcccccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agaatttagtgagcacagagccacagtgctctcatactgattctgattctggtcccccta 431

                                                                       
Query: 61  gaacacaagggacactgtaaatactcagtttctactagaggaacacacatgttgggctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gaacacaagggacactgtaaatactcagtttctactagaggaacacacatgttgggctaa 371

                                                                       
Query: 121 ttcacttggtgtttgagtactgtgacagccattatttcttgatacactccaaatacatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttcacttggtgtttgagtactgtgacagccattatttcttgatacactccaaatacatac 311

                                                                       
Query: 181 attaaaattactatcttatatctcaaaaggacaaagaacttaatatcaaaaaacctacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 attaaaattactatcttatatctcaaaaggacaaagaacttaatatcaaaaaacctacaa 251

                                                             
Query: 241 agaacataattggagaaacaggaccagtgcttccagttgaatagctaact 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agaacataattggagaaacaggaccagtgcttccagttgaatagctaact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)