BAC Information

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BAC

Clone NameMSMg01-233K21
Chromosome13 (Build37)
Map Location 63,675,206 - 63,675,423
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
Downstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233K21.T7 (MSMg01no233_k21.b1)MSMg01-233K21.TJ (MSMg01no233_k21.g1)
ACCAG399806AG399807
length740737
length of high quality
(start - end)
---218 (440 - 657)
definitionCHROMAT_FILE: MSMg01no233_k21.b1 PHD_FILE: MSMg01no233_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:26 2005CHROMAT_FILE: MSMg01no233_k21.g1 PHD_FILE: MSMg01no233_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGAATCGGCGGAANN
CNCANAGATATCACCAAAAAGAAGAGGANGANGAAGAAGAAGAAGATGAG
GAAGAGAAGGACGATATTGTACCAAAAAAAAGAGGGGGCACNGNNGAGGG
AGAAGNACCGAGAGGAAACCCAGACCCACAAGGAAAACACCAAAGAAAGA
CCACACACGGAAAAAACAGAGGGGAACCGCGGGAAGAAAAGAAGAANAAG
AAGGGTATTTAAGCATCCCNAAAGAAACAAGAGAGACAAAGAAGAAAGCA
AGGCAGATGAGGANGCCAAGCATTTGTGTTTTTAGAGCGAGCGGCGAAGG
CCCAGGGGAGAGTTGTTTTTTCCATCCCACCCCCAGCGATACATGTGTTA
AGTAATGTTTAAAGGGACTAAGCTGGAAAAAATATAAATAGGGACTTGGA
GGGGGAGGCTGATATAAAGATGAATGGAAATTCGAGGAAAAGATTGGCAG
TGTGAAGTCGAGATTGAAGAGAGTGGATAAGATTCGTGAGAACAGGGGAC
AGTGAGTACGATGTTGAATAGAAAGAGAAGCTTTGGTGCCTGAACGTCGT
GTGGCTGGAGAATTTTCTCAGAGTCAGGTGTCAATATCTAATAATTTGTA
TCCGCCCCTTCTTTATTTTTTGTTTTCTTCTCGGTTACCATGAAATAATT
CTATGCGCGGTCTGTGAGTTTGCTTGGAACTGCTGAGGTT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAAAATTGATAAGTTGTCACCTTGACCCCTT
ACCTTCCCTTGATCTCCTTTTTTTCCCATCTATAGTTCATCTTTACAAAC
GCTATCTTCCAGCTGTGTGTGAAACACAGTGTACCGAGTAGTTTAATGGA
TACATGCTGCTCTAACCTGAACCGGCCCTTGTAATTCAAGGGGAGAGGCC
CAGCATTATCCACCAGCACCTCCATCCCAAACCAATCACCGGAGGTTGCC
TGGTACAGGAAGGCAGCGTGTTTGGTANCTTTTGGGTGGTATCCCCCAAA
AACCACAGTAATTGGTATTTTTACACCAAGCAAATATCAATTATGATCCC
TCAGCCAGTTTCCCAGTTTGGATTCCAAGGAAACCCGACTTCGTGTCTTC
AGAAGTAGTGGCTTCCCTGGACAGACAACAACAACAATAACAACAAAACA
ACAACAACAACAAAACAACAAAATCCCCACTCCCAAACCCAGTACTCAAA
TAGGTCTATCCAAGGAACCCTCTATGATGATAAGCCCACGACCCTGCTGT
GGGCCTGGAGTTTATTAGCTGGACCACTGATAGCCTCTTCTGGCAGTGTG
AGCTGGGGAAGAGTATTGTTTTGTCTTTTGGAAGCCCTAGGGGCGCCCCC
ACCTCCTTTGAAGCTGTGGAAGATGCTTAAATGCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_k21.g1 MSMg01no233_k21.g1 CHROMAT_FILE:
MSMg01no233_k21.g1 PHD_FILE: MSMg01no233_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:26 2005
         (218 letters)



>mm_chr13_63674924_63675541
          Length = 618

 Score =  414 bits (214), Expect = e-120
 Identities = 217/218 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcgtgtcttcagaagtagtggcttccctggacagacaacaacaacaataacaacaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttcgtgtcttcagaagtagtggcttccctggacagacaacaacaacaataacaacaaaac 441

                                                                       
Query: 61  aacaacaacaacaaaacaacaaaatccccactcccaaacccagtactcaaataggtctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aacaacaacaacaaaacaacaaaatccccactcccaaacccagtactcaaataggtctat 381

                                                                       
Query: 121 ccaaggaaccctctatgatgataagcccacgaccctgctgtgggcctggagtttattagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccaaggaaccctctatgatgataagcccacgaccctgctgtgggcctggagtttattagc 321

                                                 
Query: 181 tggaccactgatagcctcttctggcagtgtgagctggg 218
           |||||||||||||||||||||||||| |||||||||||
Sbjct: 320 tggaccactgatagcctcttctggcaatgtgagctggg 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)