Query= MSMg01no233_m09.b1 MSMg01no233_m09.b1 CHROMAT_FILE:
MSMg01no233_m09.b1 PHD_FILE: MSMg01no233_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:33 2005
(321 letters)
>mm_chr13_94326303_94327022
Length = 720
Score = 476 bits (246), Expect = e-139
Identities = 305/346 (88%), Gaps = 34/346 (9%)
Strand = Plus / Minus
Query: 5 gaattcacttgtaggcctagaccttctggtacagaatttagaattacagtacaacagatc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaattcacttgtaggtctagaccttctggtacagaatttagaattacagtacaacagatc 444
Query: 65 aaacctcaacagacctcacctattaacctaaaaagtatattntgggaaacagaatattat 124
||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 443 aaacctcaacagaagtcacctattaacctaaaaagtatatt-tggaaaacagaatattat 385
Query: 125 aaaatgtatgaaaactcatacaactgggctatgtccagtgacatgaacttgtaatccgga 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 384 aaaatgtatgaaaactcatacaactgggctaggtccagtgacatgaacttgtaatccgga 325
Query: 185 ggcaggagtatcacctatctgagccagcacgagctacaatagtga--------------- 229
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggcaggagcatcacctatctgagccagcacgagctacaatagtgaattccagcccagcct 265
Query: 230 ------------------ttgtttccaaaagtaaaataaaattagcctctaacattgata 271
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggctactccacgaggctttgtttccaaaagtaaaataaaattagcctctaacattgata 205
Query: 272 tgttggtttagcaataaaaatataaaatttttaaaaatgtatcttt 317
||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 tgttggtttagcaataaaaatataagatttttaaaaatgtatcttt 159
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space: 221832
Effective search space used: 221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_m09.g1 MSMg01no233_m09.g1 CHROMAT_FILE:
MSMg01no233_m09.g1 PHD_FILE: MSMg01no233_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:33 2005
(650 letters)
>mm_chr13_94166382_94167431
Length = 1050
Score = 1158 bits (599), Expect = 0.0
Identities = 638/651 (98%), Gaps = 2/651 (0%)
Strand = Plus / Plus
Query: 1 caagcccatg-gtcagctcaaagactacctagggcattggtgaatgccccgaagcaaagt 59
|||||||| | ||| |||||| |||| ||||||||||||||||| ||| ||||||||||
Sbjct: 201 caagccca-gagtcggctcaaggactgcctagggcattggtgaaggccaggaagcaaagt 259
Query: 60 tcgattttgcttaggtatttggcaagtcattgcttggaggcacctataacaaaacaatac 119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcgattttgcttaggtttttggcaagtcattgcttggaggcacctataacaaaacaatac 319
Query: 120 tgaaagaaagcacacagaactattcgcaaggacaaaattagagcatacgtgctatgggat 179
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgaaagaaagcacacagatccattcgcaaggacaaaattagagcatacgtgctatgggat 379
Query: 180 gccacagttccaggagactacgtttccgtggaaactctttgcctcgggactgcttccagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gccacagttccaggagactacgtttccgtggaaactctttgcctcgggactgcttccagg 439
Query: 240 tttctaaacctgtcaagcaagtcactactggagtggatgtagcagcagggtctctcaata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttctaaacctgtcaagcaagtcactactggagtggatgtagcagcagggtctctcaata 499
Query: 300 aagccacagcacacccatctaggcttgctaaccagcttgctctggcaaccccctgtctca 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 aagccacagcacacccatctaggcttgctaaccagcttgctctggtaaccccctgtctca 559
Query: 360 gaccttgtaaggatggagttaaaactatctgccttgctacgctgcatttatttactctgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaccttgtaaggatggagttaaaactatctgccttgctacgctgcatttatttactctgg 619
Query: 420 gctctggggattcagacttcagcctctcatctatgagtgttttagccattgaacctggca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gctctggggattcagacttcagcctctcatctatgagtgttttagccattgaacctggca 679
Query: 480 tgggcactggggttggagctctgctcttgactccagtccttcttcctagatctcctcata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgggcactggggttggagctctgctcttgactccagtccttcttcctagatctcctcata 739
Query: 540 gttagctgtcatcacatggaccatgatgttgtggtacctgagtcctggacaggcaaattc 599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gttagctctcatcacatggaccatgatgttgtggtacctgagtcctggacaggcaaattc 799
Query: 600 aagtcagcactcaccaccaccagtcacgactctctaacggccttacttttt 650
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aagtcagcactcaccaccaccagtcacgactctctaacggccttacttttt 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
