BAC Information

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BAC

Clone NameMSMg01-234H06
Chromosome13 (Build37)
Map Location 109,026,549 - 109,218,214
singlet/doubletdoublet
Overlap geneElovl7, LOC668129, LOC100040524, Depdc1b
Upstream geneLOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498
Downstream genePde4d, EG668144, LOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234H06.T7 (MSMg01no234_h06.b1)MSMg01-234H06.TJ (MSMg01no234_h06.g1)
ACCAG400341AG400342
length748751
length of high quality
(start - end)
107 (219 - 325)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no234_h06.b1 PHD_FILE: MSMg01no234_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:27 2005CHROMAT_FILE: MSMg01no234_h06.g1 PHD_FILE: MSMg01no234_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,218,109 - 109,218,214)(109,026,549 - 109,026,837)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTATGACTGGCCTTATGGCTTTTTCTGTTGACTGCACAAATCAA
GTTTTCTATTCTCTGTCATATTTGAAAAATAAAAATGAATATGACTTTAT
TGTTATATGTGGAATATAGGCTCCTTTGTGGGGCAATGAGTCTCAAAATG
GTTGTTTTCAGGTAACATTTATAGAACTTTTTAAATGTAATTTTCGAGTA
TTTCTTTCAAAGTATTGGATTTACATTATTCTCAACCTTCCCTCGTCCCC
CTCCAACTCCTTCCATGTCCCCACTCTCTCTCTCTCAAAGTCATGACCAC
TTAATTAATGGTAGTAATTAAGACCCCTGNACANACACACAGACACTGCT
GAGTACATTTAGTGTTGCTCTTATGTACAAAAAAAAAAGCTGACCCCTGT
AGATTGACTCATCTTTGGCGGTTCTGGCTCATGCCTGGAGAATACATCGG
CCATTGGCTGCCTGTATCTTTTCCTCTAAAGGCTGCATTTTCTTTCTTTG
TTCTGTATTTCTTTCATGTCCTGTTAGAGAAAGGTTTTGTTCCTCATATA
AGTCTGCCTCTGTCTTCAAGTTTATTGTGATAGACCTTAGTGACCTTGAC
CCTTGCCCCTGACCTCCTTGTTTTCAATGTCCCGCTCTTAGCTCCCATTG
TAACAGAAGTAACGAGTTTTGATGTTTTGAAACTTCTGCTAGTTTCTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAGATGTGGAGAAAACTCTGAGTC
CAGGATTCCATCCTTTCCCTCCACTTGCGTCCCAGGGGTTTCGGGGACTG
AACTCAGAGCATCAGAACTTCACAGGAAGCTTAGACCTGTTGGACCATCC
TACTAGGCTGTAATTGTGCTTTTGAAACCCATCAAATGGCAGTGGGGGAG
GTAGCTTGGCAGATAGGAGCTCTTGCCGTTCTTTCTAGTAGATTTGGATT
AGGTTCCTAGCACCAGCATATCTGTAACAATTGCTTATAATTCCAGAACC
ATAGGATCTGTGAGATTCTCTTCTGGCCTCCCCCCCACTGCAAGCACATG
GTGCCTTGACATAAATGCAGGCNAAACACTTAAGATGAAACAAACAGACT
GACAGACAGACAGACAGACAGACAGACAGACAGACAAAGGCCAATCTCCG
TAATGGCCTTCCAAGTAGTCCAAGTTCATTGCCTGGAATACAGCGACAAC
TCTGGTGAGGAACAACTGTGTTTGGGAGACGAGGGCGGGTGGGGAAACCT
CTTCTTTCAATTCTATTTTACACTAAACCTGATCAACAGAACTTCCCAGG
AAGCTAAGACCTGTTGGACTATCTCGCTAGGGTCTAATTCTGCTAACCTA
TGATTCCAGAGCCTGCTAACGCCTGTATGCCTCAGGAATGGTAATTGTCG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_h06.b1 MSMg01no234_h06.b1 CHROMAT_FILE:
MSMg01no234_h06.b1 PHD_FILE: MSMg01no234_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:27 2005
         (107 letters)



>mm_chr13_109217909_109218414
          Length = 506

 Score =  168 bits (87), Expect = 7e-47
 Identities = 102/107 (95%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatagaactttttaaatgtaattttcgagtatttctttcaaagtattggatttacatta 60
           |||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||||||
Sbjct: 306 ttatagaa-tttttaaatgtaattttctagtatttctttcaaagtattatatttacatta 248

                                                          
Query: 61  ttctcaaccttccctcgtccccctccaactccttccatgtccccact 107
           |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 247 ttctcaaccttccctcatccccctccaactccttccatgtccccact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 506
Length adjustment: 8
Effective length of query: 99
Effective length of database: 498
Effective search space:    49302
Effective search space used:    49302
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no234_h06.g1 MSMg01no234_h06.g1 CHROMAT_FILE:
MSMg01no234_h06.g1 PHD_FILE: MSMg01no234_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:27 2005
         (292 letters)



>mm_chr13_109026349_109027040
          Length = 692

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%), Gaps = 1/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagatgtggagaaaactctgagtccaggattccatcctttccctccacttgcgtcccag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agagatgtggagaaaactctgagtccaggattccatcctttccctccacttgggtcccag 260

                                                                       
Query: 61  gggtttcggggactgaactcagagcatcagaacttcacaggaagcttagacctgttggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtttcggggactgaactcagagcatcagaacttcacaggaagcttagacctgttggac 320

                                                                       
Query: 121 catcctactaggctgtaattgtgcttttgaaacccatcaaatggcagtgggggaggtagc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 catcctactaggctgtaattgtgcttttgaaacccatcaaatggcagtgggg-aggtagc 379

                                                                       
Query: 181 ttggcagataggagctcttgccgttctttctagtagatttggattaggttcctagcacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttggcagataggagctcttgccgttctttctagtagatttggattaggttcctagcacca 439

                                                             
Query: 241 gcatatctgtaacaattgcttataattccagaaccataggatctgtgaga 290
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acatatctgtaacaattgcttataattccagaaccataggatctgtgaga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)