CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTATGACTGGCCTTATGGCTTTTTCTGTTGACTGCACAAATCAA
GTTTTCTATTCTCTGTCATATTTGAAAAATAAAAATGAATATGACTTTAT
TGTTATATGTGGAATATAGGCTCCTTTGTGGGGCAATGAGTCTCAAAATG
GTTGTTTTCAGGTAACATTTATAGAACTTTTTAAATGTAATTTTCGAGTA
TTTCTTTCAAAGTATTGGATTTACATTATTCTCAACCTTCCCTCGTCCCC
CTCCAACTCCTTCCATGTCCCCACTCTCTCTCTCTCAAAGTCATGACCAC
TTAATTAATGGTAGTAATTAAGACCCCTGNACANACACACAGACACTGCT
GAGTACATTTAGTGTTGCTCTTATGTACAAAAAAAAAAGCTGACCCCTGT
AGATTGACTCATCTTTGGCGGTTCTGGCTCATGCCTGGAGAATACATCGG
CCATTGGCTGCCTGTATCTTTTCCTCTAAAGGCTGCATTTTCTTTCTTTG
TTCTGTATTTCTTTCATGTCCTGTTAGAGAAAGGTTTTGTTCCTCATATA
AGTCTGCCTCTGTCTTCAAGTTTATTGTGATAGACCTTAGTGACCTTGAC
CCTTGCCCCTGACCTCCTTGTTTTCAATGTCCCGCTCTTAGCTCCCATTG
TAACAGAAGTAACGAGTTTTGATGTTTTGAAACTTCTGCTAGTTTCTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAGATGTGGAGAAAACTCTGAGTC
CAGGATTCCATCCTTTCCCTCCACTTGCGTCCCAGGGGTTTCGGGGACTG
AACTCAGAGCATCAGAACTTCACAGGAAGCTTAGACCTGTTGGACCATCC
TACTAGGCTGTAATTGTGCTTTTGAAACCCATCAAATGGCAGTGGGGGAG
GTAGCTTGGCAGATAGGAGCTCTTGCCGTTCTTTCTAGTAGATTTGGATT
AGGTTCCTAGCACCAGCATATCTGTAACAATTGCTTATAATTCCAGAACC
ATAGGATCTGTGAGATTCTCTTCTGGCCTCCCCCCCACTGCAAGCACATG
GTGCCTTGACATAAATGCAGGCNAAACACTTAAGATGAAACAAACAGACT
GACAGACAGACAGACAGACAGACAGACAGACAGACAAAGGCCAATCTCCG
TAATGGCCTTCCAAGTAGTCCAAGTTCATTGCCTGGAATACAGCGACAAC
TCTGGTGAGGAACAACTGTGTTTGGGAGACGAGGGCGGGTGGGGAAACCT
CTTCTTTCAATTCTATTTTACACTAAACCTGATCAACAGAACTTCCCAGG
AAGCTAAGACCTGTTGGACTATCTCGCTAGGGTCTAATTCTGCTAACCTA
TGATTCCAGAGCCTGCTAACGCCTGTATGCCTCAGGAATGGTAATTGTCG
T

Query= MSMg01no234_h06.b1 MSMg01no234_h06.b1 CHROMAT_FILE:
MSMg01no234_h06.b1 PHD_FILE: MSMg01no234_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:27 2005
         (107 letters)



>mm_chr13_109217909_109218414
          Length = 506

 Score =  168 bits (87), Expect = 7e-47
 Identities = 102/107 (95%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatagaactttttaaatgtaattttcgagtatttctttcaaagtattggatttacatta 60
           |||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||||||
Sbjct: 306 ttatagaa-tttttaaatgtaattttctagtatttctttcaaagtattatatttacatta 248

                                                          
Query: 61  ttctcaaccttccctcgtccccctccaactccttccatgtccccact 107
           |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 247 ttctcaaccttccctcatccccctccaactccttccatgtccccact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 506
Length adjustment: 8
Effective length of query: 99
Effective length of database: 498
Effective search space:    49302
Effective search space used:    49302
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)

Query= MSMg01no234_h06.g1 MSMg01no234_h06.g1 CHROMAT_FILE:
MSMg01no234_h06.g1 PHD_FILE: MSMg01no234_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:27 2005
         (292 letters)



>mm_chr13_109026349_109027040
          Length = 692

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%), Gaps = 1/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagatgtggagaaaactctgagtccaggattccatcctttccctccacttgcgtcccag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agagatgtggagaaaactctgagtccaggattccatcctttccctccacttgggtcccag 260

                                                                       
Query: 61  gggtttcggggactgaactcagagcatcagaacttcacaggaagcttagacctgttggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtttcggggactgaactcagagcatcagaacttcacaggaagcttagacctgttggac 320

                                                                       
Query: 121 catcctactaggctgtaattgtgcttttgaaacccatcaaatggcagtgggggaggtagc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 catcctactaggctgtaattgtgcttttgaaacccatcaaatggcagtgggg-aggtagc 379

                                                                       
Query: 181 ttggcagataggagctcttgccgttctttctagtagatttggattaggttcctagcacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttggcagataggagctcttgccgttctttctagtagatttggattaggttcctagcacca 439

                                                             
Query: 241 gcatatctgtaacaattgcttataattccagaaccataggatctgtgaga 290
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acatatctgtaacaattgcttataattccagaaccataggatctgtgaga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)