BAC Information

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BAC

Clone NameMSMg01-234K09
Chromosome13 (Build37)
Map Location 65,018,998 - 65,174,688
singlet/doubletdoublet
Overlap gene4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1
Upstream geneEG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767
Downstream geneLOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234K09.T7 (MSMg01no234_k09.b1)MSMg01-234K09.TJ (MSMg01no234_k09.g1)
ACCAG400471AG400472
length728725
length of high quality
(start - end)
318 (44 - 361)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no234_k09.b1 PHD_FILE: MSMg01no234_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:41 2005CHROMAT_FILE: MSMg01no234_k09.g1 PHD_FILE: MSMg01no234_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,018,998 - 65,019,309)(65,174,400 - 65,174,688)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTCTTCCTCTTTTGTCCTTCTCTCCTCCCTCCCTCCCACCCTTCCT
GTCTCTGCATCTCTTCTTTACTTTTTAAATTAGCATACAAAGAATTGGTT
TGAGTAATAGGATCTTTAAACAAAATTTGTTTTTCTTGATTGTCTGATGT
CTTCCACCCACCTCTCCTCCTTTGTCTCCTTCCTCACCTTGTACTCCTCC
ACTCTCCACAAGCTTCCTTTTGGTTTTCATATCACATGCATCTTTTCACC
CACTTCTCCTGCATCAACACTACATTTTATTACAAATTTCCTCTTTTCCA
AATCAAGTATATTTTTATGTGCCTCGCGCACCAAATCTCCAGAAAGAACA
GAAATCTATTCTCCTTGGAGCACGAGGAGAAGAGTTGAGAGCAGTCACAA
TAGCATCTATCTGAAGCTCACAGTATGTCTGTTGGGGTGTGCTGGTGTGC
TACAATTTCATGTATAGGATCTGGATTCTTGAAAGAGTATGGAATCTCTG
GACTAGGACAAGCATTGAACACTGGCTCATATGTCCTCTTCTCCTGTACG
AGCTTTTCCTCTGTGATGGGCTATCTGAGCACTTTGCTGGGCCTCAAAAG
GCATTATATAAGAGGTCAGAGCTCAAGATATTTAGCTTACAGAAGCAGAA
TTCTACATGTCACCTATGAAGCAGCTTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGTAGCTGGCAGGGACCCAGCTCCA
AAAACTGGGTCATTCACATACTACCCAGGTCCTTGGGATTCAGTAGACCT
TCATACATACTTACAAACTTCCAGAACAGCTAGTTTAAGGGGGTGCTGAA
ATGATTCAGCAAGACATGCTTGTCACCAAGCAATGACCCGAGTTCAGTCT
CCAGAATCTACATGGTAGAAGGAGAAAATTGTTTCTTGATGATTGTCCTC
TGATCTTCATGTACTTGCTGGGACATGTATACAAACATGGAACAAATAAG
TATAAAAACTATTTTTTTTGCACCCCCCCCCCCATACTGTAAAATTAACC
AGAGGAATGTGTTTCAGTGTTTCCTTAAAGGAAAAAAATTAGGTAGAAAG
AAAGGTTTTACAGATCCTGCTATCTCCAGGACTGAACAGATAAGAATCAA
TACATTACAACATATGCAGTAAACACTTTCCAACCTATTACAGTTGTCAG
TCCAGAAAGGCAAGGGTATATGTTGTTGTCTTTCAGGAGCATTCAGTGCA
GCTTTTGCGGATTGCCTAGAGGCTTGTTCCCTTGAAATGGTATCTAGGCC
AAGCTTCATGTTCTTCTGTGATTAACTCTCTGCAGAGGATATGAGCAGTC
TGGGACACTAACTTGTCCTACCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_k09.b1 MSMg01no234_k09.b1 CHROMAT_FILE:
MSMg01no234_k09.b1 PHD_FILE: MSMg01no234_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:41 2005
         (318 letters)



>mm_chr13_65018794_65019511
          Length = 718

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcttcctcttttgtccttctctcctccctccctcccacccttcctgtctctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcttcctcttttgtccttctctcctccctccctcccacccttcctgtctctg 264

                                                                       
Query: 65  catctcttctttactttttaaattagcatacaaagaattggtttgagtaataggatcttt 124
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catctcttccttagtttttaaattagcatacaaagaattggtttgagtaataggatcttt 324

                                                                       
Query: 125 aaacaaaatttgtttttcttgattgtctgatgtcttccacccacctctcctcctttgtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacaaaatttgtttttcttgattgtctgatgtcttccacccacctctcctcctttgtct 384

                                                                       
Query: 185 ccttcctcaccttgtactcctccactctccacaagcttccttttggttttcatatcacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttcctcaccttgtactcctccactctccacaagcttccttttggttttcatatcacat 444

                                                                       
Query: 245 gcatcttttcacccacttctcctgcatcaacactacattttattacaaatttcctctttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcatcttttcacccacttctcctgcatcaacactacattttattacaaatttcctctttt 504

                       
Query: 305 ccaaatcaagta 316
           ||||||||||||
Sbjct: 505 ccaaatcaagta 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no234_k09.g1 MSMg01no234_k09.g1 CHROMAT_FILE:
MSMg01no234_k09.g1 PHD_FILE: MSMg01no234_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:41 2005
         (289 letters)



>mm_chr13_65174375_65175063
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtagctggcagggacccagctccaaaaactgggtcattcacatactacccaggtcctt 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||
Sbjct: 314 aggtagctggcagggacccagctccaaaaactgggtcattcacagactattcaggtcctt 255

                                                                       
Query: 61  gggattcagtagaccttcatacatacttacaaacttccagaacagctagtttaagggggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gggattcagtagaccttcatacatacttacaaacttccagaacagctagtttaagggggt 195

                                                                       
Query: 121 gctgaaatgattcagcaagacatgcttgtcaccaagcaatgacccgagttcagtctccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gctgaaatgattcagcaagacatgcttgtcaccaagcaatgacccgagttcagtctccag 135

                                                                       
Query: 181 aatctacatggtagaaggagaaaattgtttcttgatgattgtcctctgatcttcatgtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aatctacatggtagaaggagaaaattgtttcttgatgattgtcctctgatcttcatgtac 75

                                                            
Query: 241 ttgctgggacatgtatacaaacatggaacaaataagtataaaaactatt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  ttgctgggacatgtatacaaacatggaacaaataagtataaaaactatt 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)