BAC Information

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BAC

Clone NameMSMg01-234K10
Chromosome13 (Build37)
Map Location 36,629,993 - 36,630,302
singlet/doubletsinglet
Overlap genenone
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590
Downstream geneLOC666758, Nrn1, F13a1, Ly86, LOC100042794, LOC100042800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234K10.T7 (MSMg01no234_k10.b1)MSMg01-234K10.TJ (MSMg01no234_k10.g1)
ACCAG400473AG400474
length726728
length of high quality
(start - end)
314 (46 - 359)247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no234_k10.b1 PHD_FILE: MSMg01no234_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:41 2005CHROMAT_FILE: MSMg01no234_k10.g1 PHD_FILE: MSMg01no234_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTATCACAGTAGTCTGGAACCCCATCATCATCCTCAGCCCGA
GCCTGTCCGGGAAGCCTTTGAGCCCCTGCCATCCTTTCTCCCTTCTCTTC
TTTGTTTTGCAAAGGGCAGGCTTCAAAGAGGCTGCTGATGAAATGCCAGG
GCTTCCCTTGAAAGTAGAAGTCACAGCTCTAAGCCAGGCAAGGTAGATAT
TTGCTTTCATAAACCCAAGGCCAGGGGCCAGCCCCTTGGCCCTAGGCTTG
GACCTTCCTGCCCACTGCCCTAGTAGAGGAAGGAAAAGGAGCAAGAGCTG
CCCTGAGTGCTTTTATTCTCACTCGACCCCCACGCCTGCCAACTCCCCAG
GTTGTCCCCTGCAGGAGGCCCCCACTTCCAGAAAGAAGGCGACCTTTAAG
GGAGAGCACAGGGCTTTGATGTCTCCCCCCTTTCCATCCTGGGCACTTTG
TAGTCAGCCTGCTTCACTCATGACCAGCCTTAATAATCAGATTCCAGGCC
TGACAAGATGCTGGAGGCTGATGCAAGACTGGGAGTGCTGGGATAAATAT
TTGATGAGAGGTAGCCATTATCATCAAGCATGTAGGGGGTAGGCAGCTGC
CCAGAGTGTGGCTGTGTTTGGAAATAGGCTCATTCCAGACATAATTAGCT
AAGAGGACGTCTTACTGCGTGAGTTN
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGAGCCAGGCAATGCTCAAACA
TTTTTATTGGACTGATCATTTAATCCTTACAACCACTCAAAGAGCTGGAG
CCCATTGCTTTCCTGCTTTTGTAGATAGGAAAACTGAAGCTCATTAAAAA
TGCTCAAATGTTGAGTGGCAAAATTGGGATTTGATTCCAAAGTCTGCCAT
TCATAGAGGACTAAGAGAAAGACAGAATTGGGACAAAATGTCACATGTCT
GTGAAGCCTTTGAAATGTTTCTTGTTTGTGCAGACTCACCACTGTTTGGT
TATCTAGCTGTTAGCTGCCTTCCNTTAGCAAAACCCCGAATGTGACTCAG
CTGACAGGTGGACTTGGGTGCCCCCAGACAAAAAAAAATGCATAAAACTC
ATCCACAAACTGCATATGAAAGAACTTGTCTTGTGCTCTGACAATTGGTG
TAATTTTTCTTTGGATTGGCGTAATTCCAAATATGCATTGAAGGAGTCAC
TTTTTCTTGCCTACTCTGTGATAGGAAGGAAGCTGGGCACCATTCTCCCA
GCCAGATATTGGGTTACCTGCGAGCACCCACTGTAATGGCTGCTTAAACA
TCCTGCGTTCCTCCATTAGAGCCCTGGACCCTGTAACACCCTACCTAGTG
ATGCACCACTTACCATTCCTTTTTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_k10.b1 MSMg01no234_k10.b1 CHROMAT_FILE:
MSMg01no234_k10.b1 PHD_FILE: MSMg01no234_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:41 2005
         (314 letters)



>mm_chr13_36629789_36630502
          Length = 714

 Score =  547 bits (283), Expect = e-160
 Identities = 304/311 (97%), Gaps = 2/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttatcacagtag-tctggaaccccatcatcatcctcagcccgagcctgtcc 63
           ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcactttatcacagt-gctctggaaccccatcatcatccccagcccgagcctgtcc 263

                                                                       
Query: 64  gggaagcctttgagcccctgccatcctttctcccttctcttctttgttttgcaaagggca 123
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggaagcctttgagtctctgccatcctttctcccttctcttctttgttttgcaaagggca 323

                                                                       
Query: 124 ggcttcaaagaggctgctgatgaaatgccagggcttcccttgaaagtagaagtcacagct 183
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 ggcttcaaagaggctgctgatgaaatgccagggcttcccttgaaagtggaagtcacagct 383

                                                                       
Query: 184 ctaagccaggcaaggtagatatttgctttcataaacccaaggccaggggccagccccttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctaagccaggcaaggtagatatttgctttcataaacccaaggccaggggccagccccttg 443

                                                                       
Query: 244 gccctaggcttggaccttcctgcccactgccctagtagaggaaggaaaaggagcaagagc 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 gccctaggcttggaccttcctgcccactgccctaggagaggaaggaaaaggagcaagagc 503

                      
Query: 304 tgccctgagtg 314
           |||||||||||
Sbjct: 504 tgccctgagtg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)