BAC Information

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BAC

Clone NameMSMg01-235G19
Chromosome13 (Build37)
Map Location 103,904,674 - 103,904,952
singlet/doubletsinglet
Overlap geneMast4
Upstream geneCd180
Downstream geneEG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235G19.T7 (MSMg01no235_g19.b1)MSMg01-235G19.TJ (MSMg01no235_g19.g1)
ACCAG401002AG401003
length726731
length of high quality
(start - end)
312 (45 - 356)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no235_g19.b1 PHD_FILE: MSMg01no235_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:45 2005CHROMAT_FILE: MSMg01no235_g19.g1 PHD_FILE: MSMg01no235_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGACCTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATTTGTTTCAGCGCCTCCGGCTTTATGTGAAGTTCCTTGATC
CACTTAGATTTTACCCCACCACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGTTTCATTTCTGGGTCTTCTATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCATTTTTTATCACAATTGCTC
TGTAGTAAAGCTTTCGGTCCGGTATGGTGATTCCGCCAGATTTCCTTTTA
TCCTTGAGTAGACTTTTTGTTATCTN
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACCTCCTTCTGTGCTTCGTCCTCT
TCTCGACATGCAGGGTTCTGCCCCGATTGTGTTAGGAAATCAGCCACATG
CGGGGGGTTCTTCATAGAAATGTGGGGCTGAGCTTGAGGAAAAGGGGAGT
GGTTAGCAGGAGGAGCTTTCTGCTGATGGCCCTGGAGCCTGCTGTGCAAG
CTTAGGTTATGATAACACCACTTTCTCTGTCTAGAAGGACCAAGGGCCTG
CCTGTTCCCTCAGCTCCTCTGTGTGCCACTATTTACAGGGAAAACATCAC
TGGGGCCTTTCTTTATGGCGCCCCTCCGGACTCGAGGAGAGCCAAATCTG
CACGACCCTGGCCAGACCCCCATATGCCCAGAGAATCTGCCAGGCACTGG
GACTTGTGTTGGCCTTTCTGCGCCACCACCTGGGCTTCTGCATGGTTGGT
CCCTGAGCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGTTTCCCCCCTTTTCTTCCTGTCCGA
TTTTTTATTTAACTTTACCGTTTTCACTTTCTCTTTGATCTTTTTTTCTT
CCTTTCCACCCTTGTGCCTCTCGATATTATACTTCTTTCTGATTATTTAT
TTATTTTCCCATATAATCTTTTTGTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_g19.g1 MSMg01no235_g19.g1 CHROMAT_FILE:
MSMg01no235_g19.g1 PHD_FILE: MSMg01no235_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:45 2005
         (287 letters)



>mm_chr13_103904471_103905153
          Length = 683

 Score =  478 bits (247), Expect = e-139
 Identities = 273/283 (96%), Gaps = 4/283 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ctccttctgtgcttcgtcctcttctcgacatgcagggttctgccccgattgtgttaggaa 63
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 482 ctccttctgtgcttcgtcctcttctcgacatgcagggttctgtggcgattgtgttaggaa 423

                                                                       
Query: 64  atcagccacatgcggggggttcttcatagaaatgtggggctgagcttgaggaaaagggga 123
           | ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 422 accagccacatgcgggggg-tcttcatagaaacgtggggctgagcttgaggaaaagggga 364

                                                                       
Query: 124 gtggttagcaggaggagctttctgctgatggccctggagcctgctgtgcaagcttaggtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtggttagcaggaggagctttctgctgatggccctggagcctgctgtgcaagcttaggtt 304

                                                                       
Query: 184 atgataacaccactttctctgtctagaaggaccaagggcctgcctgttccctcagctcct 243
              ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 303 ---ataacaccactttctctgtctagaaggaccaagggcctgcctgtttcctcagctcct 247

                                                      
Query: 244 ctgtgtgccactatttacagggaaaacatcactggggcctttc 286
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctgtgtgccactatttacagggaaaacatcactggggcctttc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 683
Length adjustment: 9
Effective length of query: 278
Effective length of database: 674
Effective search space:   187372
Effective search space used:   187372
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)