BAC Information

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BAC

Clone NameMSMg01-235O07
Chromosome13 (Build37)
Map Location 3,520,952 - 3,521,290
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667375, LOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182, 2810429I04Rik
Downstream geneGdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235O07.T7 (MSMg01no235_o07.b1)MSMg01-235O07.TJ (MSMg01no235_o07.g1)
ACCAG401318AG401319
length708715
length of high quality
(start - end)
334 (375 - 708)549 (74 - 622)
definitionCHROMAT_FILE: MSMg01no235_o07.b1 PHD_FILE: MSMg01no235_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:19 2005CHROMAT_FILE: MSMg01no235_o07.g1 PHD_FILE: MSMg01no235_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATCAACCGGATTTACATTACTGAAACTTTGTGATGTGTTAGGTC
AGATCATCATTTGCTGTGCGGCTATGCTGTGCATTATAGAGTATTTAGCA
GTATCCTTGACTTATAGTCACTGGATGTCCCTACCAGCCACCCCTCTGAC
CCCACTGACTTTTAACCAAGTATCTACAGATACTGCTTCCAGCCACCCCT
CTGACCCCACTGACTTTTAACCAAGTACCTACAGATACTGCTACTAGTCA
CTCCTCTGACCCCACTGACTTAACAAAGAATCTGCCAGATACTGCCAGTG
TTCCTAGGTGGCAAAAGTAACCTGGGATGAGAACTAGGCTATCTAGAGTA
ATATGATTGTCCATTCTGACCAACTAACTGTAAGGGGATAGGATCCCATG
GCAGAGATCTGGCTGCCAGCAGTCCACACCTGTGGGAGGACTAGCCATTT
ACCAGAAGAGATGGGTAGCCAATATTCTAGTAGGTGTCAGTTACATTTCC
TTAATCACAGACATTAGGTTTTCAATGCCAACATGTGTACCCTGACTCCT
GAGTAATTTAGTGGAAATTTCCAGAGAGATATATTTAAGATAGCTTTATA
GTAAAAAAAAAAAAAAAGAAACTGGGGCAACTCAGTGGTAAAATATTTGC
CTGGCTTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTGTCTGGTTTCTGACTGTATTAACT
CTAACCCCAGGGTCCCTTCTTGTGGCATAGATTATGAGTTCCCTGATTTC
CTCTGTTGCCCAAAGGTCAGAATGTATTTTTAAAAGAAATTTCTAGATTT
TTAATTTTATAGCCATTGGACTATATTTTCTTATTTGTATTTTTGGGAGA
GGGGTCTCTTTCTATATACCTGTATTTTTTTTAGGAAGTCTCTGTTTTAC
AACCCGAACTTTGCAATGGAAACTTCTTATCTCTGGCAACTAGGATAGCC
TAGACACAGGGCATTCATAGAATTGTAAATTCTGTATTCCTATCACAAAA
GATAAACTCCCACATCCTTCCTTTCTTCAATACAACCAGACATTTACAGT
ACACATCAGTGAGCAAAGGTTCAGATGAATATGGGTTGCTGGTCTGTATT
CACATTAGCTAATAATACCTTCCCTAGATATGTCTTTCTCAGTTCCCAGA
TACAGGTCTGAGGACAATGGGGATAGAACCCTATATTCACACCAAACACA
AGTCTCAAAAGAAGGTAGAGGGGTAAGGGAGTGGAAGGNNCTGGNGCCTC
TATATTAACCTCAATTTTAATGGGTTCATTAACTGGAGACCGCCCATTTG
TCCTGTTCTCTGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_o07.b1 MSMg01no235_o07.b1 CHROMAT_FILE:
MSMg01no235_o07.b1 PHD_FILE: MSMg01no235_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:19 2005
         (334 letters)



>mm_chr13_3520752_3521490
          Length = 739

 Score =  609 bits (315), Expect = e-179
 Identities = 331/339 (97%), Gaps = 5/339 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatgagaactaggctatctagagtaatatgattgtccattctgaccaactaactgtaag 60
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 539 ggatgagaactaggctatctagagtaatttgattgtccattttgaccaactaactgtaag 480

                                                                       
Query: 61  gggataggatcccatggcagagatctggctgccagcagtccacacctgtgggaggactag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gggataggatcccatggcagagatctggctgccagcagtccacacctgtgggaggactag 420

                                                                       
Query: 121 ccatttaccagaagagatgggtagccaatattctagtaggtgtcagttacatttccttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ccatttaccagaagagatgggtagccaatattctagtaggtgtcagttacatttccttaa 360

                                                                       
Query: 181 tcacagacattaggttttcaatgccaacatgtgtaccctgactcctgagtaatttagtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tcacagacattaggttttcaatgccaacatgtgtaccctgactcctgagtaatttagtgg 300

                                                                       
Query: 241 aaatttccagagagatatatttaagatagctttatagtaaaaaaaaaaaaaa-----aga 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||     |||
Sbjct: 299 aaatttccagagagatatatttaagatagctttatagtaaaaaaaaaaaaaaaaaataga 240

                                                  
Query: 296 aactggggcaactcagtggtaaaatatttgcctggcttg 334
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 239 aactggggcaactcagtggtaaaacatttgcctggcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 739
Length adjustment: 9
Effective length of query: 325
Effective length of database: 730
Effective search space:   237250
Effective search space used:   237250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)