BAC Information

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BAC

Clone NameMSMg01-236D07
Chromosome13 (Build37)
Map Location 91,152,567 - 91,152,911
singlet/doubletsinglet
Overlap geneAtg10
Upstream geneXrcc4, Tmem167, LOC100043170, LOC624190, EG435376, Rps23
Downstream geneLOC100042959, Ssbp2, LOC666889, Acot12, Zcchc9, Ckmt2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236D07.T7 (MSMg01no236_d07.b1)MSMg01-236D07.TJ (MSMg01no236_d07.g1)
ACCAG401533AG401534
length722821
length of high quality
(start - end)
345 (70 - 414)---
definitionCHROMAT_FILE: MSMg01no236_d07.b1 PHD_FILE: MSMg01no236_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:43 2005CHROMAT_FILE: MSMg01no236_d07.g1 PHD_FILE: MSMg01no236_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGCGGAAT
TCTTTTTATTAACTTCTGAGAATGGATATTAGTGTTTCAATTCATGGCAG
TGACTCTTTTTTGATGTCCAACTAGTATTAGTGGAGAGCCTCTCCTTAAT
CCCAGAGCAGTGCTGACACAACTGGTGTGTTTGTAACGCTTTCCCTGCCT
TATGGTGTGAGAGGCTGCACATAAACATACATGTGCTGTCCAAATTTTAA
ATCAGTTATTTCCCAAAGAAGGCTGGTTGCTTTGGCAAACGGTAAATGGG
GTGTGTGTGTGTCTGGGTGTGTTCTGGGCTAGACAATATCAGTACTTGCA
GTTACAGGGCCTTTTACAAGTTTTGAAGCACCTAGTGTCTTAGTTTAATT
TTCCTATACAGATGATACACAAGGATCTGCAGAGTTGGAGGGAAAACTAA
ATTTATATGTGTATATATGTGTATATATATATACACACATATATATTTAT
ATCCATACATATATATGCATAATACTTTGAACATTGCCTAGGACAGATAA
TATCATATTTTATGTAAAATAATCAGTTTTAATTACCTCCGGGCATATAG
CTATTTCCGCAATTTCTACGATAATTGACTAACATTCCAGACTAACCTCA
TGGTTTGACCCACCCCTCTCGTCTCTGTAGCTGTACCTATACCCTTGTGC
CCCAACTGATTGCTTGCGCCGC
CTTCCTCCCTTTCCTCCCCTTTCTTATTTTCCCTTTTTTTTTTTTNNNNT
CTACTATGCTANGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGCTTTGGTAACCATGGAAG
GAATTATGGTCTGCAACCACTCTCTTCCGCCTACCATGGGACAAATGTTT
ATTCTACAACAAATGCCAGCAAACTGGCAGAGTGGACAGCATTCTCCTGC
GGACATTCCTCTCCCCTGGCCTGAGCTTGCATCCATGCTTCTGTTTATAT
TCTTGGTGCTTCCAGAAAGCTATTATGCCATTCACTGCGAGGAAGGCAGT
TCCTCGCATGCCTTTTACACAATCTCTGATTATGGATGTGCGTCATACAT
AAAGATCCCTGGGGCTTTTTTTTTTTCCCGCGACAACCCCCGTTTTGCTC
CTCCCTTCTGTTGTTGCTCCACTTTTTCACAACAAAAAAAATGAGTCTTG
CTCGGCCGGCCCACACCTCAAATTTTTGTGCTTTTTTTAACCCTACACCC
CAGATGACATGCAAAGCCCTTTTTTTGATATTTTCCCCCCTCCCTCCCCC
CCACTTTTTTCCTCCCCGAGTTTTGACCTATTTCCCCGCCTCATTTATTT
CCCCCTTACCCCCCTTTCTTTTTTTCACCATGGTTTTCTCTTTACCCTAT
TATCAACTTTCCGGATTTATATCCACTTCTCCCCTCTTTTTTGCCCTGTT
TTATGTCCCTCTCACCTATTTCCATTGTTTACCAATAAAATTTTTTAACT
CTATCTTATATTGAGAATGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_d07.b1 MSMg01no236_d07.b1 CHROMAT_FILE:
MSMg01no236_d07.b1 PHD_FILE: MSMg01no236_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:43 2005
         (345 letters)



>mm_chr13_91152367_91153111
          Length = 745

 Score =  607 bits (314), Expect = e-178
 Identities = 338/346 (97%), Gaps = 2/346 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatggatattagtgtttcaattcatggcagtgactcttttttgatgtccaactagtatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 545 gaatggatattagtgtttcaattcatggcagtgactcttttttgatgttcaactagtatt 486

                                                                       
Query: 61  agtggagagcctctcct-taatcccagagcagtgctgacacaactggtgtgtttgtaacg 119
           |||||||| ||||| || ||| ||| || || ||||||||||||||||||||||||||||
Sbjct: 485 agtggagaacctct-ctctaacccctgaccaatgctgacacaactggtgtgtttgtaacg 427

                                                                       
Query: 120 ctttccctgccttatggtgtgagaggctgcacataaacatacatgtgctgtccaaatttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctttccctgccttatggtgtgagaggctgcacataaacatacatgtgctgtccaaatttt 367

                                                                       
Query: 180 aaatcagttatttcccaaagaaggctggttgctttggcaaacggtaaatggggtgtgtgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaatcagttatttcccaaagaaggctggttgctttggcaaacggtaaatggggtgtgtgt 307

                                                                       
Query: 240 gtgtctgggtgtgttctgggctagacaatatcagtacttgcagttacagggccttttaca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtgtctgggtgtgttctgggctagacaatatcagtacttgcagttacagggccttttaca 247

                                                         
Query: 300 agttttgaagcacctagtgtcttagtttaattttcctatacagatg 345
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 agttttgaagcacctagtgtcttagtttaattttcctatacagatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)