Query= MSMg01no236_k15.b1 MSMg01no236_k15.b1 CHROMAT_FILE:
MSMg01no236_k15.b1 PHD_FILE: MSMg01no236_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:17 2005
(611 letters)
>mm_chr13_29573477_29574487
Length = 1011
Score = 1164 bits (602), Expect = 0.0
Identities = 608/610 (99%)
Strand = Plus / Minus
Query: 1 acacatcaccaaatccggcttcattgaaccttataattcatgttaccatagaaacagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 acacatcaccaaatccggcttcattgaaccttataattcatgttaccatagaaacagaaa 751
Query: 61 agctcatataagaatcatgttaacagtaccgtagatagtaaataccttcactccagcccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 agctcatataagaatcatgttaacagtaccgtagatagtaaataccttcactccagcccg 691
Query: 121 cagtgtcataaaatgattttaataacagatgtgtgagaatcctgtgaaatttaatatggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cagtgtcataaaatgattttaataacagatgtgtgagaatcctgtgaaatttaatatggc 631
Query: 181 ttcttttaaatattataacagtattattcagtatgcttacttttaatttttaaagcaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttcttttaaatattataacagtattattcagtatgcttacttttaatttttaaagcaata 571
Query: 241 tctgcggccttatgtacggctttgtgcttattccaaaatatttgcagtgccatgcaggaa 300
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tctgtggtcttatgtacggctttgtgcttattccaaaatatttgcagtgccatgcaggaa 511
Query: 301 cagtgtctgaggataaaaatctcacttagcatggtgtttatttaatttttagttaacagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cagtgtctgaggataaaaatctcacttagcatggtgtttatttaatttttagttaacagt 451
Query: 361 catgtttcatttcacttttttcttgaagcaaaacagcatcttttaggttcacaccagatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 catgtttcatttcacttttttcttgaagcaaaacagcatcttttaggttcacaccagatt 391
Query: 421 tggaactgtaataaattccattaaattcttcagagttgtcaactaaggttgtcctcatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tggaactgtaataaattccattaaattcttcagagttgtcaactaaggttgtcctcatgt 331
Query: 481 cccccccaccccctccccttgtctgttttataaccattcttctttctgggttgcaaaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cccccccaccccctccccttgtctgttttataaccattcttctttctgggttgcaaaaaa 271
Query: 541 caattttcatgtatactccccccattttcactactgatattaaggtcatttgttttgtag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 caattttcatgtatactccccccattttcactactgatattaaggtcatttgttttgtag 211
Query: 601 ttgtaaattc 610
||||||||||
Sbjct: 210 ttgtaaattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_k15.g1 MSMg01no236_k15.g1 CHROMAT_FILE:
MSMg01no236_k15.g1 PHD_FILE: MSMg01no236_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:17 2005
(286 letters)
>mm_chr13_29421331_29422017
Length = 687
Score = 503 bits (260), Expect = e-147
Identities = 278/284 (97%), Gaps = 1/284 (0%)
Strand = Plus / Plus
Query: 1 tcagaaacatctttcccaaaacaatatgaaataaggcaggaactgacccttgttcaatta 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tcagaaacatctttcccaaaacaatatgaaataaggcaggaactgatatttgttcaatta 260
Query: 61 aaag-aaaaaaaattcacttgattttcccagatgaaggactacactaacagttcccacca 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaaaaaaaaattcacttgattttcccagatgaaggactacactaacagttcccacca 320
Query: 120 tgcactctgctaacacaggtgaaggactaccctgacagttcccaccatgcaccctgctaa 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaccctgctaacacaggtgaaggactaccctgacagttcccaccatgcaccctgctaa 380
Query: 180 cacaggtgaaggactaccctgacagttcctaccatgcaccctgctaactttgatgagaac 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 cacaggtgaaggactaccctgacagttcctaccacgcaccctgctaactttgatgagaac 440
Query: 240 acctctccgtcctcggaaatctcactgctaagcctgcttacttg 283
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctctccgtcctcggaaatctcactgctaagcctgcttacttg 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space: 187806
Effective search space used: 187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
