Query= MSMg01no236_l12.b1 MSMg01no236_l12.b1 CHROMAT_FILE:
MSMg01no236_l12.b1 PHD_FILE: MSMg01no236_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:21 2005
(525 letters)
>mm_chr13_111634800_111635724
Length = 925
Score = 895 bits (463), Expect = 0.0
Identities = 503/519 (96%), Gaps = 6/519 (1%)
Strand = Plus / Plus
Query: 8 gaattcagattcc---tttccccttattctgagcttcatctgggtttttactgaagtatt 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcagattccaggt---cccttattctgagcttcatctgggtttttactgaagtatt 264
Query: 65 ctgtttgcgtctagatgcctctagcttgtcttcatatgctgcttgtgtttgacaaaatag 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtttgcgtctagatgtctctagcttgtcttcatatgctgcttgtgtttgacaaaatag 324
Query: 125 gctgacttgtttccttgtgtttagtgttttccttctgtttctgtgtctcaggcttctcta 184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 gctgacttgtttccttgtgtttagtgttttccttctgtttctgagtctcaggcttctcta 384
Query: 185 acttgacctttatttattccaggtgctcagccagtctttcttccatttaatttcccaagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acttgacctttatttattccaggtgctcagccagtctttcttccatttaatttcccaagc 444
Query: 245 ttctctaattccacccttttcagtagctatgccagtcttttttaaacaaattaacccaac 304
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 ttctctaattccaccctttccagtagctatgccagtcttttataaacaaattaacccaac 504
Query: 305 ataagaaaaaggaggttaaaaaaaaacctgctgctaaaatccatgacctggatgtcccaa 364
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 ataagaaaaaggaggggaaaaaaaaccctgctgctaaaatccatgacctggatgtcccaa 564
Query: 365 aaacagcttctacaaacaccctgtcagcttttttgaaacaaactatccatcacttctttt 424
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaacagcttctgcaaacaccctgtcagcttttttgaaacaaactatccatcacttctttt 624
Query: 425 cctgccttttactctaaggtacttgaaatcaagcctcccattctgcttagtcacaatggt 484
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 cctgccttttactctaaggtacttgaaaccaagcctcccattctgcttagtcacaatggt 684
Query: 485 gactacttgtctttaaatgtttctttttccctcaaacag 523
||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 gaccacttgtctttaaatgtttctttttccctcaaacag 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_l12.g1 MSMg01no236_l12.g1 CHROMAT_FILE:
MSMg01no236_l12.g1 PHD_FILE: MSMg01no236_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:21 2005
(290 letters)
>mm_chr13_111788270_111788959
Length = 690
Score = 538 bits (278), Expect = e-157
Identities = 287/290 (98%)
Strand = Plus / Minus
Query: 1 tcaggtgagatttagaaagatttatgcaagatgttcatgaaagtcatgatacctgataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 490 tcaggtgagatttagaaagatttatgcaagatgttcatgaaagtcatgatagctgataca 431
Query: 61 cagaggtaatggcctgaactccagccaggcagcctgctcccaaacctcttcctcaaaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 430 cagaggtaatggcctgaactccagccaggcagcctgctcccaaacctcttcctcagaatc 371
Query: 121 attacttctaaattgttttcttcagaatttttttcagggggatgtttttataagagtgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 attacttctaaattgttttcttcagaatttttttcagggggatgtttttataagagtgca 311
Query: 181 ttaaatttcatgttctaaatcatgcctgaaagtggggctatgatataaggtggaagatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttaaatttcatgttctaaatcatgcctgaaagtggggctatgatataaggtggaagatag 251
Query: 241 aagaagaaagtcttgagggtttaatatagatagtctagagaatggtagct 290
|||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 250 aagaagaaagtcctgagggtttaatatagatagtctagagaatggtagct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
