Query= MSMg01no236_m21.b1 MSMg01no236_m21.b1 CHROMAT_FILE:
MSMg01no236_m21.b1 PHD_FILE: MSMg01no236_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:27 2005
(680 letters)
>mm_chr13_29525742_29526821
Length = 1080
Score = 1292 bits (668), Expect = 0.0
Identities = 677/680 (99%)
Strand = Plus / Plus
Query: 1 gggtgcatcgttttaacagcatgaagatcactgccctgtgtgctatttttacctactaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggtgcatcgttttaacagcatgaagatcactgccctgtgtgctatttttacctactaat 260
Query: 61 ccctgcagctacagtggcaaaataaagtagactaatatataaaatataatgttcaatgtt 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctgcagctacaatggcaaaataaagtagactaatatataaaatataatgttcaatgtt 320
Query: 121 aatatcccattgaaaggaaaatatatacatataatatcaaagttaggctcagggaagcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatcccattgaaaggaaaatatatacatataatatcaaagttaggctcagggaagcat 380
Query: 181 gacccgctacttagatatgatacagttaaaaggtggccagaacgtttggattaggttagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacccgctacttagatatgatacagttaaaaggtggccagaacgtttggattaggttagc 440
Query: 241 acaggttagacagtctgtgaaagaaggaaacagctgagctatggctgcaactgtggtaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaggttagacagtctgtgaaagaaggaaacagctgagctatggctgcaactgtggtaac 500
Query: 301 aatcacacggccatctccagtacaaaggcattgtaataaatggatgcaggttttatattc 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 aatcacacggccatctccagtacaaagacattgtaataaatggatgcaggttttatattc 560
Query: 361 aagggctgttcatatgtgctttattctgaggctgggtcatttgtttgtctttagatggga 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 aagggctgttcatatgtgctttattctggggctgggtcatttgtttgtctttagatggga 620
Query: 421 agagaaggaatgaatttaatcttttctcaaagttccacatcctgtattctgaggctacta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagaaggaatgaatttaatcttttctcaaagttccacatcctgtattctgaggctacta 680
Query: 481 ctggagtgtgacttctgtataaggatgtgtgtcagtgtaacactaaggaaatgccatcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggagtgtgacttctgtataaggatgtgtgtcagtgtaacactaaggaaatgccatcag 740
Query: 541 ctagacattttctcaaactctcccgatatttagcaacatccttaaaattactttaaaagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctagacattttctcaaactctcccgatatttagcaacatccttaaaattactttaaaagc 800
Query: 601 atttttcgtctttgccaaagatggaaaatagagttacatgcacaaatgactttgggcaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttttcgtctttgccaaagatggaaaatagagttacatgcacaaatgactttgggcaat 860
Query: 661 ctgctgcagaactgttttaa 680
||||||||||||||||||||
Sbjct: 861 ctgctgcagaactgttttaa 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_m21.g1 MSMg01no236_m21.g1 CHROMAT_FILE:
MSMg01no236_m21.g1 PHD_FILE: MSMg01no236_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:27 2005
(589 letters)
>mm_chr13_29664716_29665708
Length = 993
Score = 1011 bits (523), Expect = 0.0
Identities = 574/593 (96%), Gaps = 4/593 (0%)
Strand = Plus / Minus
Query: 1 aatctgggtctaacctcttaggtacataaggtgtttgcagttctcctgcagtgcactggc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 793 aatctgggtctaacctcttaggtacataaggtgtttgcagttctcctggagtgcactggc 734
Query: 61 gtgctggttgcaggtagactgactaactctatctccagctctctggttgattgggtgcct 120
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 733 gtgctggttgcaggcggactgaccaactctatctccagctctctggttgattgggtgcct 674
Query: 121 gcctgccagtgttttctaggatgtgttcactataaagcactgtcacagagccacccttgc 180
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 673 gcctgccagtgttttccaggatgtgttcactataaagcactgttacagagccacccttgc 614
Query: 181 tacattttagggtatacttcctttgaaatttacatctaaatgtggctaggtggtggattg 240
||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 613 tacattttaggctatacttcctttgaaatttacatctaaatgtggctacgttgtggattg 554
Query: 241 tgtagaaatattctgttgaactgtttgtttatattaactttagggtgtgtactgtgttct 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 553 tgtagaaatattctgttgaactgtttgtttatattaactttagggtgtatactgtgttct 494
Query: 301 ttgagtcttatatccttaaaatactgtaatcatctaaatcaacttacttgtcattggtac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttgagtcttatatccttaaaatactgtaatcatctaaatcaacttacttgtcattggtac 434
Query: 361 taaggacagcaaatgagcagaaccaatgtcagaaatacggattagaatgggtttgctgtc 420
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taatgacagcaagtgagcagaaccaatgtcagaaatacggattagaatgggtttgctgtc 374
Query: 421 cctcagagcacctctcttgagtttgatggactgatagtctggttagaacgaagggggaaa 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 373 cctcagagcacctctcttgagtttgatggactgatagcctggttagaacgaagggggaaa 314
Query: 481 ctgtcagctatgtggatgccagggaagaccttgttgggctgcttttctttgagaatttta 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctgtcagctatgtggatgtcagggaagaccttgttgggctgcttttctttgagaatttta 254
Query: 541 gagttcagatatag----tggttcatgcctttagttccagcccaggggaggca 589
|||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 253 gagttcagatatagtggctggttcatgcctttagttccagccgaggggaggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 993
Length adjustment: 10
Effective length of query: 579
Effective length of database: 983
Effective search space: 569157
Effective search space used: 569157
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
