BAC Information

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BAC

Clone NameMSMg01-237H18
Chromosome13 (Build37)
Map Location 85,801,003 - 85,801,310
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
Downstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237H18.T7 (MSMg01no237_h18.b1)MSMg01-237H18.TJ (MSMg01no237_h18.g1)
ACCAG402418AG402419
length690685
length of high quality
(start - end)
309 (362 - 670)313 (21 - 333)
definitionCHROMAT_FILE: MSMg01no237_h18.b1 PHD_FILE: MSMg01no237_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:19 2005CHROMAT_FILE: MSMg01no237_h18.g1 PHD_FILE: MSMg01no237_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGCGGCCGCCTGTTTCACACGTGGAGGTNGAACTATAGAATTTTCAAAA
AAATTCTCATTACAGTCATGCATGACAGACTATATTACATGATAGAGGAA
ACCCGGTGGGCTCCTCTGATAAATGGAGGTTCCCTATGAATACTTAGAAT
TTATCAGTTAAACCACTCCCATATGCAGGAATCTACAATCATCTAGGAAT
AAGGTGGGTTGTGGTTTAAGGAGGAACTAGAGTACTGCATTATTCATGAA
AAGGTTAACAAGAGCAGAACCCCCCTGGTGCAAGTTTTCATAAGGTTTTT
ATTTATAGCATAATTAGGTGCTTACTAATGGATTCCTCTTGTTTGGTTAC
AACGCCCACTAGAATTGTGACTAGGGTATGAAACCCTCAAACCCAGCTCC
TTAGAATAGCTGACTTTAGATAGGGTTGCTTTTATCTCAGTTGTAACCAC
TGCCTGGTTCCTGCTAGTCTTTATGTATGCATTTCTCTGATTTGTGTCAT
TATGCATCGGATGACCTCAATGTATCTTGGCTGATGTATCACCTAACTTC
CTTGTTTTTTTCTGTAATATAAGTCTGATGCTAACTTTGAAAGATTACAC
TCAGATTCAGCACTTTCTTGTGTTCATGTCGGTTTGTCACTCTCTGACTC
CTTGCCCATCTGGGTACCAGAACTCTGATTCTCCCCTGGG
XXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCTTCTTACAGTAGTCTAT
AAGTGGCAAGTGAGCCATTTTTGAAGAGTTACATGGCATTCCACCCCTAA
GATAGGACCCAGTACTGCCTGCAGATAAGAACCAAGGTGATTGCTTATCA
TAAAATCACCACACGTGGGCTTCTGCTCTGATCACTGACAGCATGCGACA
CAGGTCCTAAGGAATGCCGTCCTAGTTCCCTGTACCCTTACCTGCAGTGA
TCACAGCATTCAACATGAGAATGCCAGGCCGGAGCTTTATTAATGAACCC
ATCAGCTAAATTACAGTCATCATTAAAACTGTCTTTTAGTGTCCCCCCGC
CTCGACTATCAAATTCAGAAAGATTAATCATTCTTTTAAATATGCTCTGA
TGGAAACCTAGTTCCTTTTTTCTAGTCAAAGATGTCATTTAATATGGTAC
TTTCTTTCTTCCTGGCAATTAAGTGAAGGGCAAGTGGGTAGAACCAACCT
TTGGGGTAAATTTGTTAAGTTAAGGCCCCCCCCTTCAGTGTTAAAAACTG
AAGGTACGTCTTGAAAGTGAATGGCATTGATAATCAGTGTTTGTGAAGCT
CACCAGGTAATCTGCAGAGAATCAGAGATATTTCAGACAAGAACAAATAC
TTCAGGGGTGAAAACTTCTGCCAGGAAATCATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_h18.g1 MSMg01no237_h18.g1 CHROMAT_FILE:
MSMg01no237_h18.g1 PHD_FILE: MSMg01no237_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:19 2005
         (313 letters)



>mm_chr13_85800800_85801512
          Length = 713

 Score =  526 bits (272), Expect = e-154
 Identities = 299/312 (95%), Gaps = 8/312 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagcttcttacagtagtctataagtggcaagtgagccatttttgaagagttaca 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggaattcagctttttacagtagtctataagtggcaagtgagccatttttgaagagttaca 452

                                                                       
Query: 64  tggcattccacccctaagataggacccagtactgcctgcagataagaac----caaggtg 119
           ||||||||||||  |||||||||||||||||||||||||||||||||||    |    ||
Sbjct: 451 tggcattccacctgtaagataggacccagtactgcctgcagataagaacctctc----tg 396

                                                                       
Query: 120 attgcttatcataaaatcaccacacgtgggcttctgctctgatcactgacagcatgcgac 179
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 395 attgcttatcataaaatcaccacacgtgggcctctgctctgatcactgacagcatgcgac 336

                                                                       
Query: 180 acaggtcctaaggaatgccgtcctagttccctgtacccttacctgcagtgatcacagcat 239
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 335 acaggtcctaaggaatgccgtccttgttccctgtacccttacctgcagtgatcacagcat 276

                                                                       
Query: 240 tcaacatgagaatgccaggccggagctttattaatgaacccatcagctaaattacagtca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcaacatgagaatgccaggccggagctttattaatgaacccatcagctaaattacagtca 216

                       
Query: 300 tcattaaaactg 311
           ||||||||||||
Sbjct: 215 tcattaaaactg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)