NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTACACCATCCCTAGATTACTTATAATAAATTAATGGACC
TGTTATCCTACTAGTTGTTATATAGTTTAGGAAATAATGACAAGAAAAAA
AGTCTACATATGTTGTGTGACATTTTTCCCATGAAGACTTGAACAAACCC
TTACACAGGAAACCTATGACAGATGACAGTAACAGTGCCACCAAAGTCCA
ACTTGGTAAAGCAATGGCTTTTTGCTGCTTGCTTTGTTTTTTGTTTGTTT
GGTTAGTTTGAGACAGAGTTCTTCATGTAACCTTGGCTGTCCCAGAAGCA
GCTCTGTGGAGTGGGCCAGTCTCCAACTCACAGAGCTTCACCTGCCTCTG
CCTCCTTAGTCCTGGGATTAACGCCGCATGCCTTTAGTAAGTGAGTTTTA
CAAAGGTTACATAAAAGAATATGGGCAATAGGTTATTTACAGGAGCAAAA
ATAACCCAAAGTCAGCTCTATCATCAAAAGCCCATGCCAGCATGGGTGAT
GGCTAGTAAAAGCTTGAAGCCTGGAACTTGCTACACAACTTACAGGCATC
TCAACAGGATATACTGTGTCCTTTCAAGGCAACTTAGTTGGTCAGAGCCT
CTTCCAGGCAGCTTGGCTGTTCTCTGTCTTTTCTAGGCACCCAGGCTTGT
CTGGGCGAATGCTTCTCTGCAGGACTTACTGTTTGTGTAAC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGGAGATCAAGCCTTCCCTGCTTG
AGGAGGACTCTTGGCGGCGCGTTGCATCGCCTGCGCTGTTGTCACTCGGT
AACTCCTCCATCCAGGTCTAGCGGTTCTGTGGGTGCCTCGGCTCTCCAGG
AGTTTCTCCTTCGGAGACCCAGCCTGGAGTTGGGGGGACGCGGTCCTTGC
TGGGTCTCTTTCTTCACTCACCCGCACACGCTCGGTCCGGTGGCGGAGCG
ACGAGCGCTGCCTTTAGCGCTGCAACTTCTAGCAACAACTTCCCGCGGGG
CTCCTGGGAAGTTCTGCATGATATAACTGTATTCAGTAAATATTTACGGA
AAGCTGTCTGCCCGAGACGAGTTCAGATGCTGGGAGGCCGGTAAGGCAGC
CTAGACAGTTGAACCACGTGGGGTTTTAATTTCCTTTTCTACTCTTTACT
TTTGGAAACTCTGGCTTTAGCTTGACGGTTGCCTGACTGGACTCTCAGTA
CCCAGGGGTGGGGATGGAAGGCAGAATAGTAATCGCAAATGACTCGGATA
TTGGTGGCTCAGGCCTCCACAATGAGAAAAGACACAAAGGGAGTATAATT
TCAGTTTTGAGTGTCTTAANAATTTGGAGAGAGATTCCTATAAGACGTGT
GAATGAGGTAAGACGTATAGTCGAAGGAATTAGTAATAAGGACATCAGG

Query= MSMg01no260_b05.g1 MSMg01no260_b05.g1 CHROMAT_FILE:
MSMg01no260_b05.g1 PHD_FILE: MSMg01no260_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:03 2005
         (593 letters)



>mm_chr13_12349408_12350397
          Length = 990

 Score = 1085 bits (561), Expect = 0.0
 Identities = 584/595 (98%), Gaps = 7/595 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggagatcaagccttccctgcttgaggaggactcttggcggcgcgttgcatcgcctgc 60
           |||||||||||||||||||||||||||||||||||||||||||||||     ||||||||
Sbjct: 790 tttggagatcaagccttccctgcttgaggaggactcttggcggcgcg-----tcgcctgc 736

                                                                       
Query: 61  gctgttgtcactcggtaactcctccatccaggtctagcggttctgtgggtgcctcggctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gctgttgtcactcggtaactcctccatccaggtctagcggttctgtgggtgcctcggctc 676

                                                                       
Query: 121 tccaggagtttctccttcggagacccagcctggagtt--ggggggacgcggtccttgctg 178
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 675 tccaggagtttctccttcggagacccagcctggagttcgggggggacgcggtccttgctg 616

                                                                       
Query: 179 ggtctctttcttcactcacccgcacacgctcggtccggtggcggagcgacgagcgctgcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ggtctctttcttcactcacccgcacacgctcggtccggtggcggagcgacgagcgctgcc 556

                                                                       
Query: 239 tttagcgctgcaacttctagcaacaacttcccgcggggctcctgggaagttctgcatgat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tttagcgctgcaacttctagcaacaacttcccgcggggctcctgggaagttctgcatgat 496

                                                                       
Query: 299 ataactgtattcagtaaatatttacggaaagctgtctgcccgagacgagttcagatgctg 358
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ataactgtattcagtaaatgtttacggaaagctgtctgcccgagacgagttcagatgctg 436

                                                                       
Query: 359 ggaggccggtaaggcagcctagacagttgaaccacgtggggttttaatttccttttctac 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggaggccggtaaggcagcctagacagttgaaccacgtggggttttaatttccttttctac 376

                                                                       
Query: 419 tctttacttttggaaactctggctttagcttgacggttgcctgactggactctcagtacc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tctttacttttggaaactctggctttagcttgacggttgcctgactggactctcagtacc 316

                                                                       
Query: 479 caggggtggggatggaaggcagaatagtaatcgcaaatgactcggatattggtggctcag 538
           |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 315 caggagtggggatggaaggcagaatagtaatcgcaaattactcggatattggtggctctg 256

                                                                  
Query: 539 gcctccacaatgagaaaagacacaaagggagtataatttcagttttgagtgtctt 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gcctccacaatgagaaaagacacaaagggagtataatttcagttttgagtgtctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 990
Length adjustment: 10
Effective length of query: 583
Effective length of database: 980
Effective search space:   571340
Effective search space used:   571340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)