BAC Information

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BAC

Clone NameMSMg01-260C03
Chromosome13 (Build37)
Map Location 60,045,465 - 60,045,695
singlet/doubletsinglet
Overlap genenone
Upstream geneNtrk2, LOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
Downstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260C03.T7 (MSMg01no260_c03.b1)MSMg01-260C03.TJ (MSMg01no260_c03.g1)
ACCAG402881AG402882
length833761
length of high quality
(start - end)
---226 (83 - 308)
definitionCHROMAT_FILE: MSMg01no260_c03.b1 PHD_FILE: MSMg01no260_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:08 2005CHROMAT_FILE: MSMg01no260_c03.g1 PHD_FILE: MSMg01no260_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAGATCCGCGT
GAATTCAGACATTTTTTCTAAGATCATTGTTACCTGGCTCACCAGCATTT
AAAAAACATTATGGATCGTTCTGACGTCCCAGGAAGAAGAAACAAACAAA
CAACCTCATGTTAGTCTAGAGTCTCAGATGCCATAATTTAGAATTTGAGG
AGAAATTCTTTCGTGTGAACCTGTTTGATCTAGTACTTGGACCTTAGGTA
GCCTCAGAGAACACACCCTGAAGAGCTTTCCAAAAGGGTGTCTATGAAAG
TGAGTGCTGAAGGACATTCTCATTGTTTTTCCTCTCCTGGTCTGTAAGCC
TCCTGAGAGGGAGGGAGAACTTGATTACTACCGTATGATTATTCCTGCTT
CTCTCTGGTAATCTGTATACTCCCCCACCTTTTTCTGAGCGATATTAACA
CCTTGTTGAATTGACTAAATGTTATGAATGATTTGAACGTATACTGAATA
TCTCTTTTGTTACTGAGAGAAAAACCTACGCGAACTCTCTCCCCACGGAG
TACACTCATGCTAGTCTTATGCTCTGTATAACCCCTATTTGCACCTTGAG
ACAAAAATATAGGAGGTTTCATCCGCAGGAATTATTATCCTTTATCTTCT
TACTTACAAGACCTGTACAGGGTACATGAACTTCTTATATGTATAAATTA
AAATTACATCCTCTCTTGGTTTGTTATCTCGTCGACGCCCATCTCCTATG
TATTATGCTAATACTTACTATTTCTACCAAGCGTTTTCCTTTCATTGAGA
CTCTCTTGATAATCTCCTTAGTTTGCAATTTAT
TCTCTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGAAAGTTCAGGTGA
TGGCTAGCTTGGTCTGGTGTTTTGTTTGTTTGTTTTGTTTTGTTTTTTTT
AAACTTTGTATGTAAAAGATTAAATAATCATTTGGAAATCCTTGTCCAAT
CATTAGGAAACACAGGTGATGTTTTCCCCTTGAGGTCTATCAAGACAAGC
CAGTCATTTTCTAAACAGAGCATTCATTTAAAAAAAAAAACATAGATTTT
CTCTCAATACTACTAGACTTGACCTTAGCCCTATTTATTAATTATTAAGA
ATACCCCGTTTAACTGTTTTTTTCCCCTCTGATAGAGTTAATTGCAGGGT
CCTTGTAATTAATACTGGCGTCTACCCCCCCATTCATCCCTTTCTCATGT
CTGTTATTTAGGATGTGCTATTTCATGCCAATTGTTTTCCCTATACTTCA
TGTTGCCCCTTTGCACCTATCTTTGCTTGATTAGATTTTGCTATGATTCC
ATCTCTGGAATTTTTCATGGTAATTTTTTTTGGTGTTACTCCCGCCTGTT
CTTAGTCTCTCCAGACCCTTGTCCCTTTTTATCTACTTGTTTCTTTTTTT
CCCCCTAATTCCCTATTCATTATTGTTTGCCCTTTTTTATTCCCCTTTCT
GCTTTTCCCCCCCATATTATTTTTCCCACAATACTACTCCTTTGATCTCA
CTCTTTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_c03.g1 MSMg01no260_c03.g1 CHROMAT_FILE:
MSMg01no260_c03.g1 PHD_FILE: MSMg01no260_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:08 2005
         (226 letters)



>mm_chr13_60045268_60045895
          Length = 628

 Score =  389 bits (201), Expect = e-113
 Identities = 222/231 (96%), Gaps = 5/231 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagaaagttcaggtgatggctagcttggtctggtgttttgtttgtttgttttgttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 cacagaaagttcaggtgatggctagcttggtctggtgttttgtttgtttgttttgttttg 257

                                                                       
Query: 61  tt---ttttttaaactttgtatgtaaaagattaaataatcatttggaaatccttgtccaa 117
           ||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 258 ttttgttttttaaactttgtatgtaaaagattaaataatcatttggaaatctttgtccaa 317

                                                                       
Query: 118 tcattaggaaacacaggtgatgttttccccttgaggtctatcaagacaagccagtcattt 177
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tcattaggaaacacagctgatgttttccccttgaggtctatcaagacaagccagtcattt 377

                                                              
Query: 178 tctaaacagagcattcatttaaaaaaaaaaa--catagattttctctcaat 226
           ||||||||||| ||||||| |||||||||||  ||||||||||||||||||
Sbjct: 378 tctaaacagagtattcattaaaaaaaaaaaaaacatagattttctctcaat 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 628
Length adjustment: 9
Effective length of query: 217
Effective length of database: 619
Effective search space:   134323
Effective search space used:   134323
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)