BAC Information

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BAC

Clone NameMSMg01-260E22
Chromosome13 (Build37)
Map Location 77,353,538 - 77,353,999
singlet/doubletsinglet
Overlap genenone
Upstream geneGm276, Mctp1, LOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
Downstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260E22.T7 (MSMg01no260_e22.b1)MSMg01-260E22.TJ (MSMg01no260_e22.g1)
ACCAG403008AG403009
length753744
length of high quality
(start - end)
678 (76 - 753)619 (74 - 692)
definitionCHROMAT_FILE: MSMg01no260_e22.b1 PHD_FILE: MSMg01no260_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:22 2005CHROMAT_FILE: MSMg01no260_e22.g1 PHD_FILE: MSMg01no260_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATAGAGTTCACGGACACAATAATCAAACAAAATGCAAA
AAGATCCTAACTCAAAACACCCAGGAAATCCAGGACACAATGAGAAGACC
AAACCTACAGATAATAGGAGTAGATGGGAATGAAGATTTTAAACTTAAAG
AGCCAGTAAATATCTTCAACAAAATTAGAGAAGAAAATTTCTCTAACCTA
AAGAAAGAGATGCCCATGAACACACAAGGAACCTACAAAACTCTAAGTAT
ACTGGACAAGAAAAGAAATTCATCCCGACACATAATAATCAAAACAGAAA
ATGCACTAAATAATGACAGAATATTAAAAGCAGTAAGGGAAAAGGGTCAA
GTAACATATAAAGGCAGACCTATTGGAATTACACCAGATCTCACCAGAGA
CTATGAAAGCCAGAAGATCCTGGACAGATGTTATAAAGAGACCGTAAGAG
AGCACAAATGCCAGCCCAGGCTACTATACCCAGCAAAACTCTCAATTACC
ATAGATGGAGAAACCAAGGTATGCCAAGACAAAACCAAATTCACACAAAT
TCTTTCCATGAATTCAGTCCATCAAAGGATAATAAAGGGAAAACTCCAAC
ACAAGGACGAAAATTATGCCCTAGAAAAAGCAAGAAGGTAATACTTTAAC
AAACCTAAAAGACAGCCACAAGAAGAGAAGCCCAATTCTAACAACAAAAA
CAA
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGTGTGTGCTACCACCCTGGGTTTG
TTGTTGTTATGGAGCCTTGTTTTGCAATATAATTAACTCCAAAATTATCT
GTTTGAATGAAACAGAAAGGAATCCCCAAAGCAATTATCTAGTTCACAAC
AAAAAGAATGCTTGAACAAGCAAGCTTTTCCAGGAGGACTGGCTTTGTTC
CTTGGTTTTGCCAATAAAAAGGTGTAAATGTCCTTGTTTAAAAAAAAAAA
TTACTCTAAGATGCTAGGGTTAAGAGGAAAAGACAGCTGGAAAGATAGTT
CAGTGCTCTTCCAGAAGACTAGGGGTTCTATTCCCAGCACCAATATTGAT
GCATAACAACTACGTATAAGTTCAGTTCCAAGAAGTCAAAGTCCTCTTGG
TCCTCAGCAGACACCACGCACAAATATGGTACAACATAAACATACATGGA
TGCATAGCATTCATAAATATTAAAATAATAATAATTTGGGGCAAAAACAA
CTTGTATTTAAAAATACACATATATAAATGTGAATAAATAATTTATGGTA
AAAAATATTTATTTTACTTAAATACATACACCTGTAAATATGTGTTTAGT
TATATAACAATTGGTAATAGTAGGCATGCATTGCTTTTAAGAAGAAGAAT
AATTCTAAATCTAGTGAGCCTTAATTTAAAAAAACTAAAGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_e22.g1 MSMg01no260_e22.g1 CHROMAT_FILE:
MSMg01no260_e22.g1 PHD_FILE: MSMg01no260_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:22 2005
         (619 letters)



>mm_chr13_77353538_77354556
          Length = 1019

 Score =  893 bits (462), Expect = 0.0
 Identities = 462/462 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtgtgtgctaccaccctgggtttgttgttgttatggagccttgttttgcaatataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 caggtgtgtgctaccaccctgggtttgttgttgttatggagccttgttttgcaatataat 403

                                                                       
Query: 61  taactccaaaattatctgtttgaatgaaacagaaaggaatccccaaagcaattatctagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 taactccaaaattatctgtttgaatgaaacagaaaggaatccccaaagcaattatctagt 343

                                                                       
Query: 121 tcacaacaaaaagaatgcttgaacaagcaagcttttccaggaggactggctttgttcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tcacaacaaaaagaatgcttgaacaagcaagcttttccaggaggactggctttgttcctt 283

                                                                       
Query: 181 ggttttgccaataaaaaggtgtaaatgtccttgtttaaaaaaaaaaattactctaagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggttttgccaataaaaaggtgtaaatgtccttgtttaaaaaaaaaaattactctaagatg 223

                                                                       
Query: 241 ctagggttaagaggaaaagacagctggaaagatagttcagtgctcttccagaagactagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ctagggttaagaggaaaagacagctggaaagatagttcagtgctcttccagaagactagg 163

                                                                       
Query: 301 ggttctattcccagcaccaatattgatgcataacaactacgtataagttcagttccaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ggttctattcccagcaccaatattgatgcataacaactacgtataagttcagttccaaga 103

                                                                       
Query: 361 agtcaaagtcctcttggtcctcagcagacaccacgcacaaatatggtacaacataaacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 agtcaaagtcctcttggtcctcagcagacaccacgcacaaatatggtacaacataaacat 43

                                                     
Query: 421 acatggatgcatagcattcataaatattaaaataataataat 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  acatggatgcatagcattcataaatattaaaataataataat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)