Query= MSMg01no261_i18.b1 MSMg01no261_i18.b1 CHROMAT_FILE:
MSMg01no261_i18.b1 PHD_FILE: MSMg01no261_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:58 2005
(598 letters)
>mm_chr13_31343223_31344220
Length = 998
Score = 1064 bits (550), Expect = 0.0
Identities = 584/597 (97%), Gaps = 4/597 (0%)
Strand = Plus / Minus
Query: 4 ggaattccatccagattc--ataaaagccacctcaaatctagtctgggacagaacttttt 61
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ggaattccatccaga--cagataaaagccacctcaaatctagtctgggacagaacttttt 741
Query: 62 gcgcaatgtgattcataccttccccgaggaagttccaatccctggccagtgtttaagcag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcgcaatgtgattcataccttccccgaggaagttccaatccctggccagtgtttaagcag 681
Query: 122 ttagctgacgaagctcaatggaatgaaaatctctgctgaaacaggaacttcttatctctc 181
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 ttagctgacgaagttcaatggaatgaaaatctctgctggaacaggaacttcttatctcta 621
Query: 182 cctctgtcaggaaccttaacgctaaggacgtctcgccaaatatcctttccttacagtcac 241
||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 620 cctctgtcatgaaccttaacgctaaggacgtctcgacaaataacctttccttacagtcac 561
Query: 242 agagagttctgtataactcttgcttgtctcgaaagtgttcctactgttaaattgaattaa 301
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agacagttctgtataactcttgcttgtctcgaaagtgttcctactgttaaattgaattaa 501
Query: 302 gtttggcctaaatttctttccatactttgatgacaatacttggtccaaagtggcttctgt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtttggcctaaatttctttccatactttgatgacaatacttggtccaaagtggcttctgt 441
Query: 362 acttagtgaactggactctagcttgatgtataaatactctgaagcctaatccaaaacctt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acttagtgaactggactctagcttgatgtataaatactctgaagcctaatccaaaacctt 381
Query: 422 gtatctagcacagagtcccagccagtcataccaaccaaacccaaagccgaccctactctt 481
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtatctagcacagaatcccagccagtcataccaaccaaacccaaagccgaccctactctt 321
Query: 482 anagctcctagatgaagtccaattatggaatgtgcggggctacactaccaggagatcgca 541
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaagctcctagatgaagtccaattatggaatgtgcggggctacactaccaggagatcgca 261
Query: 542 gtgtcactgtctcttttccagctagagaaaaatatctcagcagttggggtggtgcat 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgtcactgtctcttttccagctagagaaaaatatctcagcagttggggtggtgcat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_i18.g1 MSMg01no261_i18.g1 CHROMAT_FILE:
MSMg01no261_i18.g1 PHD_FILE: MSMg01no261_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:58 2005
(375 letters)
>mm_chr13_31166936_31167710
Length = 775
Score = 717 bits (371), Expect = 0.0
Identities = 374/375 (99%)
Strand = Plus / Plus
Query: 1 cttcttcctgaaaaagaaatgtgtgattaacaaatccaagagaagaagaaataaaataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcttcctgaaaaagaaatgtgtgattaacaaatccaagagaagaagaaataaaataaa 260
Query: 61 tacttgatttaaatttttctaagtctgttaaagtttctcaggaaatctcagattcctcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacttgatttaaatttttctaagtctgttaaagtttctcaggaaatctcagattcctcgc 320
Query: 121 tttaatacttagtgtttaacatctcttgctgtgctttcaattggaaagtttaaaaaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaatacttagtgtttaacatctcttgctgtgctttcaattggaaagtttaaaaaaaaa 380
Query: 181 tacacgtactgaaagtgatatacccaaaactcaagcgctcactcttcaagactaaccaat 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacacgtactgaaagtgatatatccaaaactcaagcgctcactcttcaagactaaccaat 440
Query: 241 gttaatgtgttaaaatatcttcctcagatcatcttttatatgaaataaataaaggattac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaatgtgttaaaatatcttcctcagatcatcttttatatgaaataaataaaggattac 500
Query: 301 tggtagagccagagtctcctctgtgtccttccctgctaacctgccatgttggagaagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtagagccagagtctcctctgtgtccttccctgctaacctgccatgttggagaagaga 560
Query: 361 aggatgggggggggg 375
|||||||||||||||
Sbjct: 561 aggatgggggggggg 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
