BAC Information

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BAC

Clone NameMSMg01-261J15
Chromosome13 (Build37)
Map Location 79,030,191 - 79,030,531
singlet/doubletsinglet
Overlap geneEG666883
Upstream gene1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneLOC666925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261J15.T7 (MSMg01no261_j15.b1)MSMg01-261J15.TJ (MSMg01no261_j15.g1)
ACCAG403939AG403940
length799710
length of high quality
(start - end)
355 (45 - 399)509 (76 - 584)
definitionCHROMAT_FILE: MSMg01no261_j15.b1 PHD_FILE: MSMg01no261_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:01 2005CHROMAT_FILE: MSMg01no261_j15.g1 PHD_FILE: MSMg01no261_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGTTCTTGCCAAGCAAAGCCCTGTGAGCTGGGCCTACAGAGTAA
GTTTGAAGTCAGCCTGGGCAACTTGGTGAGTTAGAGTATAGGTTAGCCCA
CTATACATTAAATCTCTACTACCACGAGGAAATACGATCACCATGATGTT
AATATAGTTCAGACTTGTTGCTTAATTTAAGAAATAACATGAAGGTGAAT
TTCATATATCTGCATACATTTGGTCAAAAACCATCAATAGCTGTTTTTTA
GCTCAGGAAGTAGTTCAGAATATTACCATTCTACATTTTTTTCTCACTTT
AAAATATATGAATATATGTGTGTGCCTGTGGCTGTGGCGGTGGGGTGCGG
CTGGGAGTGCATGTGCCGCGCTTCCTTTTCTGTTATATTGTCCGACTTGC
TCGTCTTACGTCTTGATTCTTCCGCTTCCCACTTTACCTTCTTTTTCTTT
TCTTCCTTTTTCCCCTTTTTTTTTCTAATTTATACTCTGACTTTTTTTCT
TTCTTATTCTTATTTCCGTACCTCCCCCTTTTCCTTCTTTCCCTTCATTC
TTTTCTTTATCTCTTTCCCCCCTATTTCTCTTTCCCTTTTCTCTCCCTTC
TCATTTTAAACTCTCTATCAATATTCCTCTCCAATACATTTTCTATCTCC
CATTTTACTATTTCACCCATGTGTCCACCTACTTTTCTTTCATTCTCTTT
GTTCATTCCTTACCTTTCTCTTTTCTTTCTGTCTTCCTTATTTATTCAC
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTT
TAATAGGGTTATTTGTTTTTCTGGATTCTAACTTCTTGGGTTCTTTGTAT
ATACTGGCTTTTAGCCTCCTATTGTATTTAGGATTGGTAAAGATCTTTTC
CCAATCTGTTTGTTGCTTTTTTGTCTTATTGATAGAGTCCTTTGCCTTAC
AGAAGCTTTGCAATTTTAGGAGGTCCCATTTGTCTAGACTGAATCTTACA
GTGTAAGCCACTGGTGTTCTGTTCAGAAAAATTTCCCCTGTGCCCCTATC
TTCAAGGCTCTTCCCCCACTTCCTCCTCTATAAGTTTCAGTGTCTCTGGT
TTTATGTGGAGTTCCTTGATCTACTTAGACTTGAGCTTTCTACAAGGAGA
TAAGAATGGATTAATTCACATTCTTCTACATGCTAACCACCAGTTGTGCC
AGCATCATTTGTTGAAACTGCTGTCTTTTTTTTTGCACTGGGTGGTTTTA
GCTCCCTTGTCAAAGATCAAGAGACCATTGTTGTGTGGGTTCATTTCTGG
GTCTTCAATCTTATTCCACTGACCTACCTGGCTGTCACTGTACAAGTCCC
ATGAAGTTTTTATTACATTTGCTCTCAAGCACAGCTTGAGATCTGGTTTG
TTGATTCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_j15.b1 MSMg01no261_j15.b1 CHROMAT_FILE:
MSMg01no261_j15.b1 PHD_FILE: MSMg01no261_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:01 2005
         (355 letters)



>mm_chr13_79029988_79030743
          Length = 756

 Score =  578 bits (299), Expect = e-169
 Identities = 331/345 (95%), Gaps = 9/345 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagagttc----ttgccaagcaaagccctg-tgagctgggcctacagagtaagt 58
           ||||||||||||||    |   |||||||||||||| | |||||||||||||||||||||
Sbjct: 204 ggaattcagagttcaaggt---caagcaaagccctgct-agctgggcctacagagtaagt 259

                                                                       
Query: 59  ttgaagtcagcctgggcaacttggtgagttagagtataggttagcccactatacattaaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttgaagtcagcctgggcaacttggtgagttagagtataggttagcccactatacattaaa 319

                                                                       
Query: 119 tctctactaccacgaggaaatacgatcaccatgatgttaatatagttcagacttgttgct 178
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 tctctactaccacgaggaaatacgatcaccacgatgttaatatagttcagacttgttgct 379

                                                                       
Query: 179 taatttaagaaataacatgaaggtgaatttcatatatctgcatacatttggtcaaaaacc 238
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tactttaagaaataacatgaaggtgaatttcatatatctgcatacatttggtcaaaaacc 439

                                                                       
Query: 239 atcaatagctgttttttagctcaggaagtagttcagaatattaccattctacattttttt 298
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 440 atcaatagctgttttttagctcaggaagtagttcagaaaattaccattctacatttgttt 499

                                                        
Query: 299 ctcactttaaaatatatgaatatatgtgtgtgcctgtggctgtgg 343
           |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 ctcactttaaaatatatgaatatatgtgtgtggctgtggctgtgg 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 756
Length adjustment: 9
Effective length of query: 346
Effective length of database: 747
Effective search space:   258462
Effective search space used:   258462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)