BAC Information

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BAC

Clone NameMSMg01-262G07
Chromosome13 (Build37)
Map Location 29,601,579 - 29,601,856
singlet/doubletsinglet
Overlap geneCdkal1
Upstream genePpia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262G07.T7 (MSMg01no262_g07.b1)MSMg01-262G07.TJ (MSMg01no262_g07.g1)
ACCAG404505AG404506
length842774
length of high quality
(start - end)
---278 (73 - 350)
definitionCHROMAT_FILE: MSMg01no262_g07.b1 PHD_FILE: MSMg01no262_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:02 2005CHROMAT_FILE: MSMg01no262_g07.g1 PHD_FILE: MSMg01no262_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAAGAGATTTTCCACTAGTGAAGGAGCCATGGGAGACGAAGGAAGATTT
AACGGAAGGAGAAATAGGACCCCTAATGTGTAAAAAGAGAACGGGGAATG
GAACAATAAGGCTTACGTGCCCCTTTCCTCTTTCCCCTTCCTCTCCCCTC
TCCTTCCCTCCTTCCCCCCCCCTTCTCTCCCCCTCTCCCCTTCCCTCCCC
TCTCTCTTTCTTCTCCCCCTTCCCCCCTTCTCCCCCCCCCCCCCCCCCCC
CCCCTCTCCCCTTTCCCCCCCCCCTTTTTTTTTCCTTCTCCTTCTCTTCT
CCCCTCTTCCTCCCCTCCTTTTTTTTTTCTTCCCCCCCCCCCCCCCCCCT
TTCCCTCTCCCCTTTCCCTCTCTCCCCCTTTCTCCCCCCCCCCCCTCTCT
TTCTTTTTTTCCCTTCCCCCCCCTTTTCCTTCTCTCTTCTTCCCCTCTTT
CCCCCCCCTCTTTTTCCCCCTTTTCCCCCCCCCTCTCCCCCCTCTCTCCC
CCCCCCTCTTTCTCCCTCCCCTCCTTTTCCTCCTTTTCCTTTTCTCCCTA
TCTCCCCCTCTCCCCCCCCTCTCTTTCTTCCCCCCTCTCCCCCTCCCTCC
CTCTTTCGCCCTCCCCCTCCTCTCCCCCGCCTCTCCTCCTTTTCCTTTCC
CCCTCTCTCCCCCTCTTTCTCCTCCCTCCCCCTCCCCTATCTTCTCCTCC
CTCCCCTCCCTCCCTCCCCTCTCCTCTTCTCCCCCCCACTTCTTCCCTCT
TCTTCTCTCTACCCTTCCTTCTTTTTCCTCCTCCCTCTTATC
ATGAAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGTCGCAGAGCAGACCACTGAGAGGAT
GAAGCTCAGGGATGTGAATACAGAATGATGCTAAGCACATAGCCAAGGCG
GCAGAGCGGCAGTAACTGGACCCCACCTGCCTGGCACCTGCACAGGAGGC
TCGGGGCCTACGGTTACGGATTTAGGTTGAGACAAGCAAAGACTTGTGTC
TCATGCTCTATGTACTTTACCCTAGGAACCGGAAGTTCTTGGAAGGAGAA
ATTGACTTAATATAAAATTGTCACTACATAGGCTCTGCAAGAAAACACTG
CTACAATCTAGGACAAACTTGGACAGCATAGATGGCTCAGTGGCTAGAGC
ATAATACCACCCCCCCCCCAATATCAGATTGCTGTTCCCAGCTCCCATAT
CAAGTGGCCCATAACTGTCTCTATCTCCAGTACCAGCACATCTAGTTCCT
CTGTTCACCCAGAACGCCCGCTTTCCTGTGTCCTTATCCCATTCCTTCCC
CTTGTTACCCCCCTACCCATTTTATTTCTAACCCTTTCCCGCCCCCGTTT
TGTTTTTTGCCCCTTTTTTTTGCCTCACCCTCCTTCCTTTTCCCCCACTC
ATATTTTTTTCCCATATCCTTCTTTACCCCTCCCCCATCCCCCCATTTAC
ATCCCCCCCCCCTTCCCCCCTTCTTTATCTCTCTCCCACAACTCATCTCA
CATCTTCTCTACTTATCTCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_g07.g1 MSMg01no262_g07.g1 CHROMAT_FILE:
MSMg01no262_g07.g1 PHD_FILE: MSMg01no262_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:02 2005
         (278 letters)



>mm_chr13_29601379_29602056
          Length = 678

 Score =  476 bits (246), Expect = e-139
 Identities = 270/278 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtcgcagagcagaccactgagaggatgaagctcagggatgtgaatacagaatgatgct 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtcacagagcagaccactgagaggatgaagctcagggatgtgaatacagaatgatgct 260

                                                                       
Query: 61  aagcacatagccaaggcggcagagcggcagtaactggaccccacctgcctggcacctgca 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcacatagccaaggcggcagagtggcagtaactggaccccacctgcctggcacctgca 320

                                                                       
Query: 121 caggaggctcggggcctacggttacggatttaggttgagacaagcaaagacttgtgtctc 180
           ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 321 caggaggctcggggcctacggttacagatttaggctgagacaagcaaagacttgtgtctc 380

                                                                       
Query: 181 atgctctatgtactttaccctaggaaccggaagttcttggaaggagaaattgacttaata 240
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 atgctctatgtactttactctaggaacaggaagttcttggaaggagaaattgacttaata 440

                                                 
Query: 241 taaaattgtcactacataggctctgcaagaaaacactg 278
           |||||||||||||||||||| ||||||| |||||||||
Sbjct: 441 taaaattgtcactacataggttctgcaaaaaaacactg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)