BAC Information

Click to search

BAC

Clone NameMSMg01-263D08
Chromosome13 (Build37)
Map Location 17,675,559 - 17,675,754
singlet/doubletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263D08.T7 (MSMg01no263_d08.b1)MSMg01-263D08.TJ (MSMg01no263_d08.g1)
ACCAG405095AG405096
length808857
length of high quality
(start - end)
204 (41 - 244)---
definitionCHROMAT_FILE: MSMg01no263_d08.b1 PHD_FILE: MSMg01no263_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:03 2005CHROMAT_FILE: MSMg01no263_d08.g1 PHD_FILE: MSMg01no263_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGATCCGCGGA
ATTCAGTATGAGTCCCTAAAATTTAATAGACTTAATTTGTTTAAATCAGA
TACTAGGAATACTTGTATTCTCTATTCTTGGACATTTCCAACAAGAAAAA
AACCAAAAATGTGAGTTAAGTAAGATATTAAAATACCAAGTCTATTCATA
TTTTAAGTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAT
TAAAACGCACCCCCAAGGTCACGTGAGCATACTAGAGCCCGGAAAGAAAG
TGCGAAATGTTGGTAATTTTTTTTTCCAGATTGGAAGCCGGCAAAAAATA
ATAAAATATTTTTTTTTTTCTCCCCCCCCCCCCCCATTGGAGATTGTGTT
TGTCTTTTAGTTACCCCCCCCCTCTTGTTTCAAAATAAAAACATCTCCAT
TTTCTGGCCCGTTCATCCTTATTTTTAGTGACGCAATATCTATTCTCGTT
GTTATCATTGAGCACTGAAGATCTTCTCCACAATATTTTTTCGACTCCTG
TCTCCTCCCTCCTTTGTTGTTTTTCTCTTGTTTTCAGCTCTTTTCTTCAC
CTCGTCACTCGTTTCTGCCCTCACTTATTTCCCATTTCTTCAATGAAATG
TTTTCTATATTCTCTTTCCCAGATTCATTACTTTTTTTGCACCTTTCTCG
TACACTCTGTGTCCTTCCTTATTTCCCCCCCCTCCCTATTTGACCTCTTT
CATTGGGTCCCGCCCCCTTGAATGACAAAATACCCCTCTATTTTTTTTAT
CTCTGCTG
AAAAGAGGGAAANNNAAAAAANNNNNNNNTANNTNNTNTNCGGAGAAGGA
GAGGGGGGGGGGGGGGNNNTTCAAAACAGAAGGNNNGNGGGGGGNTNCCA
AAAAAGGGGGNNNNNNNGNGNNNNGNNNGGGGGGGGGGGGGGGGGGGTTT
NCCAAAAAAGNAGANGGNGGGNGNNGGNNGGGGGGGGGGGGGGGGGGNGG
GGGNGGNNNNGNGNNGNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGNT
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTNANGGNNN
GNNNNNNNNGGGGNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNAAAAA
AAAAAAAACGTCNNTTTTAAAAAAANAAAGGGAGAGGGGAAAAGAGGGGG
GGGGGGGGGCCCGCAACCCAAAAGGGGGGAGGGGGGGGGGGGGGGGGGGG
GGGGCCCCGCNCGAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGGG
GNGGGGGAGGAGGGGAAGGGGGAAGAGGGGGGGGAGGGGGAAGGGGGAGG
GGGGGGAGGGGAGGAGGGGGGGGGGGGGGGGGGAGGGGAGGGGGGGGGGG
GGGGGGGGGGGGGGGGAGGGGGGAGGGGGGGGAGGGGAGGAGGGGGGGAG
GGGGGGGGGGGGGGGGGGGAGGGGAGGGGAGGGGGGAGAGGGGGGGGAGG
GGGGGGAGGGGGGAGGAAGGGAGGGGGGGGGAGGGAGAATAGGAAGGGGG
GGGGGGAGGGGAGGGGGGGAGGGGGGGGGGGGGGAAGGGGTGCGGCGAAG
AGGGGGGAGGAAGAGAGGGAAGGGAGGGGGGGGGAAGAAGGGAGGAGAGG
AGAGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_d08.b1 MSMg01no263_d08.b1 CHROMAT_FILE:
MSMg01no263_d08.b1 PHD_FILE: MSMg01no263_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:03 2005
         (204 letters)



>mm_chr13_17675385_17675988
          Length = 604

 Score =  350 bits (181), Expect = e-101
 Identities = 193/197 (97%), Gaps = 2/197 (1%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcagtatgagtccc-taaaatttaatagacttaatttgtttaaatcagatactagg 67
           |||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gaattcagtatgag-cccacaaaatttaatagacttaatttgtttaaatcagatactagg 312

                                                                       
Query: 68  aatacttgtattctctattcttggacatttccaacaagaaaaaaaccaaaaatgtgagtt 127
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 311 aatacttgtattctctattcttggacatttccaacaagaaaaaaaacaaaaatgtgagtt 252

                                                                       
Query: 128 aagtaagatattaaaataccaagtctattcatattttaagttagtgtgtgtgtgtgtgtg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aagtaagatattaaaataccaagtctattcatattttaagttagtgtgtgtgtgtgtgtg 192

                            
Query: 188 tgtgtgtgtgtgtgtgt 204
           |||||||||||||||||
Sbjct: 191 tgtgtgtgtgtgtgtgt 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)