BAC Information

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BAC

Clone NameMSMg01-263E08
Chromosome13 (Build37)
Map Location 12,987,674 - 12,988,253
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999
Downstream geneLOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263E08.T7 (MSMg01no263_e08.b1)MSMg01-263E08.TJ (MSMg01no263_e08.g1)
ACCAG405141AG405142
length737773
length of high quality
(start - end)		584 (48 - 631)293 (80 - 372)
definitionCHROMAT_FILE: MSMg01no263_e08.b1 PHD_FILE: MSMg01no263_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:08 2005CHROMAT_FILE: MSMg01no263_e08.g1 PHD_FILE: MSMg01no263_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:08 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTGTTTTTAATAGCTGAGTAGTACTCCGTTGTGTAAATGTAT
CACATTTTCTGTATCTATTCCTCTGTTGAGGAACATCTGGGTTCTTTAAA
GCCTCTTGCTATTATAAATAAGACTGCTATGAACATAGTGGAACATGTGT
CCTTATTACAAGTTGGAGCATCTTCTGGGTATATGCCCAGGAGTGATATT
GCTGGATCTTCCAGTAAAAATATGTTCACTTTTCTGAGAAACTGCCAACC
TGATTTCCAGCGTGGTTGTACCAGTTTGCAATCCCACCAGCAATGGAGGA
GTGTTCCTTTCTCCACATCCTCATCAGACGCTAAACTACTTCAGAGCAGT
TGCTTCTCTTGTAAAGGACACACCTCAGTTTCCAGCATCTACATGGCAGG
TTATAACTGTATATAACTGCAGTTCTTGAGGGTCTGGTGACCTTTCATTG
CCTTCCTACAGTGTGAGTACCCACCACAGTTAGCCCAAACACTTATATAC
ATAAAAATAAAATAAATTCACCTTTAAAATTTTCTATGAATATATTATCA
AATTCAGAGATAAAGTTAATGAAATGGAAAACATGCAAATAATTAATGAG
ATAAAAATCAGGTTCTTAACCATATCAACCAATCAGACTCCTCAGAGTTC
CCTGGGACTAAGCCATCAACTAAGGAGTACACATGGC

NTTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATTCTTAATTAGCACCAC
AGCAGTCTTATAATAGGATGTTAAAACTTTGAGGTGAAGAAGGACGATTT
TACATTAATGTTTATTTTGCCAAAAAATAGCTGTGGACACGTTTAATAAA
AATAACTAGAATATGTAACTAATATTGGATTACCACCAATTACAATCTAT
ACCAATAGATTACAGAAGTTTCTTCTACTTTCTGTTAAAGCCTTTTTGGT
TCTCACCAGTTAATTGGAATCTCACTTGATAGCCCCTAACAAAGGCTTAG
GTTCTCCTGTGGCAAGTTTATTGTGAGGTCTTACCCAAATAACATATCCT
GTAAGCTTTTGGAANTAGCTTCCGACCCAAATTGCAACAATTTTCCCAGA
AGACGTGAAACCCCAAATTTAAAAAAAACCCGGCCCCCCNTTTACTCATT
TTATAATTTGAAGGGTGGGGGGTTCCCCTTTTATNNTTTTTNNTTTTNAT
TTTTTCCATTCCTTACTTCTTCCCTCTTTCTCCCCCCTTTCCCCCCTCTC
CCCTTCCCTTTCCCTTTCCCTCTCTTTTTTTTTATTTTACTCCCTTTTTC
CCCTTCTTTTCTTTTTCCCTTTCTTTTCCCCACTTTTTTTTTCCCGCCCC
TTTTTTCCCTTTTTCCCCCCTCACCCCTTTTCCTCTTTCCCTCTTTCCCC
TTTCTCTTGCTTGACAACAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_e08.b1 MSMg01no263_e08.b1 CHROMAT_FILE:
MSMg01no263_e08.b1 PHD_FILE: MSMg01no263_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:08 2005
         (584 letters)



>mm_chr13_12987470_12988453
          Length = 984

 Score = 1083 bits (560), Expect = 0.0
 Identities = 575/580 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgtttttaatagctgagtagtactccgttgtgtaaatgtatcacattttctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtttttaatagctgagtagtactccgttgtgtaaatgtatcacattttctg 264

                                                                       
Query: 65  tatctattcctctgttgaggaacatctgggttctttaaagcctcttgctattataaataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatctattcctctgttgaggaacatctgggttctttaaagcctcttgctattataaataa 324

                                                                       
Query: 125 gactgctatgaacatagtggaacatgtgtccttattacaagttggagcatcttctgggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gactgctatgaacatagtggaacatgtgtccttattacaagttggagcatcttctgggta 384

                                                                       
Query: 185 tatgcccaggagtgatattgctggatcttccagtaaaaatatgttcacttttctgagaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatgcccaggagtgatattgctggatcttccagtaaaaatatgttcacttttctgagaaa 444

                                                                       
Query: 245 ctgccaacctgatttccagcgtggttgtaccagtttgcaatcccaccagcaatggaggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgccaacctgatttccagcgtggttgtaccagtttgcaatcccaccagcaatggaggag 504

                                                                       
Query: 305 tgttcctttctccacatcctcatcagacgctaaactacttcagagcagttgcttctcttg 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 tgttcctttctccacatcctcatcagatgctaaactacttcagagcagttgcttctcttg 564

                                                                       
Query: 365 taaaggacacacctcagtttccagcatctacatggcaggttataactgtatataactgca 424
           ||||||| | |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaaggatatagttcagtttccagcatctacatggcaggttataactgtatataactgca 624

                                                                       
Query: 425 gttcttgagggtctggtgacctttcattgccttcctacagtgtgagtacccaccacagtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttcttgagggtctggtgacctttcattgccttcctacagtgtgagtacccaccacagtt 684

                                                                       
Query: 485 agcccaaacacttatatacataaaaataaaataaattcacctttaaaattttctatgaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agcccaaacacttatatacataaaaataaaataaattcacctttaaaattttctatgaat 744

                                                   
Query: 545 atattatcaaattcagagataaagttaatgaaatggaaaa 584
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atattatcaaattcagagataaagttaatgaaatggaaaa 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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