BAC Information

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BAC

Clone NameMSMg01-264C03
Chromosome13 (Build37)
Map Location 38,554,616 - 38,554,964
singlet/doubletsinglet
Overlap geneBmp6
Upstream geneLOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik
Downstream geneTxndc5, Muted, Eef1e1, LOC621102, Slc35b3, EG666867
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264C03.T7 (MSMg01no264_c03.b1)MSMg01-264C03.TJ (MSMg01no264_c03.g1)
ACCAG405764AG405765
length736879
length of high quality
(start - end)
355 (382 - 736)---
definitionCHROMAT_FILE: MSMg01no264_c03.b1 PHD_FILE: MSMg01no264_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:14 2005CHROMAT_FILE: MSMg01no264_c03.g1 PHD_FILE: MSMg01no264_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGNAAAGCCGCGGA
ATTCACCATGTTTCCCTAAAAAGCCTTGAATTACTAATCCTGCCTTCACC
AAGACTAGGGTTATATTATGCAACCATGGCCATTTGAGGAAGCCATCTTG
GACATCCGGTCCATTGGTACTTTGGATAAGTCTAGCCACAGCCACCAACT
GGCACAAAAAAACCTTGAGGAAGAAGCATTATGATGAAGACAGTCATTAC
AAAGGACTGCATTGTTGGGTTTGGCCACTACAGTTTTGGAGATTTGTATG
ACAGTGTCAGGAAACTATTTCAAGGAAAGGAAAATAGAAAGAGGCTAAGA
GAGGAAGGATTATGAAGGCCCACCTCATCCTACTAGGAAGTGGGTGATGT
CTTTTAATCCTTAAGGCTGAGGACTGACCAACACTTTATTACAATGTGAA
TTACAACCCCTTGTCTTCTGGGAACGTTTTTCCCTTCTAAGACAACACTG
AACATTCTTTCCGTTTATCCTCTTCAGAGGCGATTCACATTCTCTATAAC
CCTGAGGGCCTTTGACTATTGTCTGCATTTTTCATCCAACCTCTCCCCCT
CCCCCTCCCCCTCCCCCTCTACACGTCTGACCATCTCCCGTGCCTTAGTG
TGAGCTGCCCTGCCTTCCTCTCTTTCCCCCAGGATAGTATAGCTATCATT
GCTGATGTTTGCTGGGAGATCCCTATTTCTCTGCTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCGCNGTGAATTCCAGNTTTTTNTTNNCCNNTT
GTGTGCGCCCAGGGTGGAGGGGGGAGAAAAAAGAGGGAGGATAAGAGGAA
AAGGAGAAGGGAACTCTCAGAGAGTAAGTTCTATCGATTGCGGGCGAGGA
AGGAGTGCAAAACAGAAAGAATTATATAACATTGTAGGCGCAGGGAGGGA
GTAAATAGTTGGGGTCCCACTCCCTGGGAATATGGGTCCCCTTTTTTTTT
TGGCGATCTAGACAAAAACATAGGGGGAGGGTCCCCACCACCTGTGGGTT
CCGTTTTTTATCTTTGATTATGTGTGTGTGGTTAAATGAGTGTGGGGTTT
TGTCGTTCTCCACCCCGCGCGTGGGATTTTTTNNTCTTGTCTTTTTTATA
AAAAAAAAACACAGCTTCTTTTTCCCCCTAAAAGAGAGGGCTCACACCCC
GGGGGGGGGGGTTTTGTGGCCGATATATTGGTTCTTCCTTCCCCTATTGT
TGGAGGAAAGAGATCCTTCCTCTCCCCCCGCGGGGGGTGGGTCTTCCTCC
GCCGAGGACTACATCAATGTGGGTNAGCNTTTGTTGTGTTTGTGCGGCGG
CGAACAACACAAACAAAAAAAATGTGGGGTGTAGTCTTTCTGCTCCTACT
ACTCCCCCCACCTCTGGGCTTCTGTTTTTTTTTCTTGTTTTATTCGCGTC
GCCGTGTTTTTCTATGATATTCTTATATTTTCATCCTCCACCGCGAGCAT
ATATCTAATTAATTATAATACCACGGCTACCCACATTTAAATATGGACCG
TAGTCACCTTTTTCTTTTCTTTTATATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_c03.b1 MSMg01no264_c03.b1 CHROMAT_FILE:
MSMg01no264_c03.b1 PHD_FILE: MSMg01no264_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:14 2005
         (355 letters)



>mm_chr13_38554557_38555311
          Length = 755

 Score =  659 bits (341), Expect = 0.0
 Identities = 349/355 (98%), Gaps = 6/355 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaggaagtgggtgatgtcttttaatccttaaggctgaggactgaccaacactttatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 actaggaagtgggtgatgtcttttaatccttaaggctgaggactgaccaacactttatta 349

                                                                       
Query: 61  caatgtgaattacaaccccttgtcttctgggaacgtttttcccttctaagacaacactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 caatgtgaattacaaccccttgtcttctgggaacgtttttcccttctaagacaacactga 289

                                                                       
Query: 121 acattctttccgtttatcctcttcagaggcgattcacattctctataaccctgagggcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 acattctttccgtttatcctcttcagaggcgattcacattctctataaccctgagggcct 229

                                                                       
Query: 181 ttgactattgtctgcatttttcatccaacctctccccctccccctccccctccccctcta 240
           |||||||||||||||||||||||||||||||      |||||||||||||||||||||||
Sbjct: 228 ttgactattgtctgcatttttcatccaacct------ctccccctccccctccccctcta 175

                                                                       
Query: 241 cacgtctgaccatctcccgtgccttagtgtgagctgccctgccttcctctctttccccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 cacgtctgaccatctcccgtgccttagtgtgagctgccctgccttcctctctttccccca 115

                                                                  
Query: 301 ggatagtatagctatcattgctgatgtttgctgggagatccctatttctctgctt 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ggatagtatagctatcattgctgatgtttgctgggagatccctatttctctgctt 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)