BAC Information

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BAC

Clone NameMSMg01-264L12
Chromosome13 (Build37)
Map Location 83,578,662 - 83,578,970
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667018
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264L12.T7 (MSMg01no264_l12.b1)MSMg01-264L12.TJ (MSMg01no264_l12.g1)
ACCAG406187AG406188
length716841
length of high quality
(start - end)
315 (46 - 360)247 (128 - 374)
definitionCHROMAT_FILE: MSMg01no264_l12.b1 PHD_FILE: MSMg01no264_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:59 2005CHROMAT_FILE: MSMg01no264_l12.g1 PHD_FILE: MSMg01no264_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACCTTTTATCACTGTGAGCAGAAATACAGAAGGATCCTGAGGCA
CAGGGTGACATTTAGTAAATAACATAGCAGCCTGAAACTGAGGGCTTGGG
TGACCTGGGCTGGTAGTTGCAGCCTTTCCTAGCTTGCTTTGCTGCAGAAG
CATGGAGCTAGTACTTCATTAATTTCTCCCACAGTTCAGAAGTAGCACAG
TAAAGGAGCACAGATGTGCAAAGAGAATTTATGACTCACCAGTTGTAAAA
TAATTTGAATCTTCTACTTATGCTTTCAAAAGGATCTCAAATTCTACATG
TGACAGAATTTTTTTAGCTCCCCCCCCCGCCGAACAAAGTGTAGGTCCAG
AAAACTGTTTAGAATCAAGAAAAGGTCATTATAATATCGGTTTCAGTCAA
TTTACACAAAAGGAAATTTCTGTAGTAATCCAAGATTCTGGTTATAAATT
ATGTCTGACAGGAAACAGCTTGTTTTTCTAAGGATAGCATCTATTTTTAA
TAGCAAACACTATAAAATCCTGTTCTTTCAGGTTAATTAAATATATAAAT
CACATGCAATCAGATCACTAAGCAACCTTGATGCTGCTCTAGCTGAAGAT
CTACTATACAATGGAATTGACAAATAAAAGGCGCTGGGTGTTACAAGCTT
TCAGAATTCCTTCCTN
ACATATTTTACTCCTCTNNACTNCCAACTTTAAAATTTCCTATTCNTCCT
ACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATCCTGTGACATTTTAAACACA
CTTGTATGGGCTCTTCAGGTCTGATCGCCTGCTTTCCTTCTCTCTCTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTCTCTCTTTCTCTTTCTTTCTCTCTCTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTCCCTATCTTCCTTTCTTTCTTTCTTTCACTCTTTCTTTTCT
ACATACAAACATTTTGAGATAAGAACCAAGGCAAAGGCCAAGGATAAATT
CATTATTGAATTTTTTCAAGTCAACCTAATAAAAAAAAAAAATTATCTGC
CTCGTAAATGTACGTGATACCTTCCTGAAACTAAAATTAATTTGCACTCA
ACCAATTTTAAAAATCTATTTGGTATATTAAACATGAAAGAAGTATAAGA
AAATAGCTCACTTCTCCTGTAATTAAAGTCTCTTACCGTGCTTACAGGCT
GCTCCCTCTGCACCTTCATCTTCTATAATAACTAATTTTCTTGTGCATGA
ACAATAAAATCTATTTACTAACTTGGAAATTCAAAGAAATTGTTTCCTAT
TTTCAACAATGGTTCAAAAATATTACCTAAATTAAAAAAGCCACACAAAT
TCCATACCTTTTCCTTGCCCGTAAACATAACTCACATAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_l12.b1 MSMg01no264_l12.b1 CHROMAT_FILE:
MSMg01no264_l12.b1 PHD_FILE: MSMg01no264_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:59 2005
         (315 letters)



>mm_chr13_83578458_83579172
          Length = 715

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaccttttatcactgtgagcagaaatacagaaggatcctgaggcacagggtgac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaccttttatcactgtgagcagaaatacagaaggatcctgaggcacagggtgac 264

                                                                       
Query: 65  atttagtaaataacatagcagcctgaaactgagggcttgggtgacctgggctggtagttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 atttagtaaataacatagcagcctgaaactgagggcttgggtgacctgggctggtagctg 324

                                                                       
Query: 125 cagcctttcctagcttgctttgctgcagaagcatggagctagtacttcattaatttctcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagcctttcctagcttgctttgctgcagaagcatggagctagtacttcattaatttctcc 384

                                                                       
Query: 185 cacagttcagaagtagcacagtaaaggagcacagatgtgcaaagagaatttatgactcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacagttcagaagtagcacagtaaaggagcacagatgtgcaaagagaatttatgactcac 444

                                                                       
Query: 245 cagttgtaaaataatttgaatcttctacttatgctttcaaaaggatctcaaattctacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagttgtaaaataatttgaatcttctacttatgctttcaaaaggatctcaaattctacat 504

                    
Query: 305 gtgacagaa 313
           |||||||||
Sbjct: 505 gtgacagaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)