BAC Information

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BAC

Clone NameMSMg01-265C07
Chromosome13 (Build37)
Map Location 17,703,224 - 17,703,530
singlet/doubletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265C07.T7 (MSMg01no265_c07.b1)MSMg01-265C07.TJ (MSMg01no265_c07.g1)
ACCAG406493AG406494
length802757
length of high quality
(start - end)
---288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no265_c07.b1 PHD_FILE: MSMg01no265_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:33 2005CHROMAT_FILE: MSMg01no265_c07.g1 PHD_FILE: MSMg01no265_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:33 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCTGGGGGGGGGAGGAGATGCAACAAAAACCCCAGAAGAANNNCGGTCT
AAAATTGCGGCGCTAAAAGAATACTAATTCCCGAGGTGGGNGGNANNNAG
NANTTTTGTCAGAAAAAAGGGNGNAGAGNANNNGNNGTNNNNNNGNNGNG
AGGAGANAGGNTTTGGCCCGGAACTCANTTTGAAGAAAAGGATGGATTCG
AGTTAAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGAGATCAAAGGCG
TGCGCCACCACTGCCCGGATATGTAGAGCATCTTTGAAGCCACCTAATTT
TTTGACTCCTTAAAATCAGCTCACTTTAGCTTTCTGTAAATGATTTCGGG
TTTCTTATCCAGGATTTTTTTTTAGAGGGAAAGCAAACAAGGGAAACAAA
ANCTTTTTTTTTTTTTTGCCCCCCCCCCCCGAAAAGAAAAGGATTAGTGG
GTGGGGGNNAACCCNCTGGAAAAAATTAGAGAAAAAGGGTTGGGGGGGGG
AGTAGGTATATATGGAGTGGAGGAAGGAGGTATAATAAAAAAATTAAAAT
AAAAAGGTAAGGTTTAAGTAAAGATATTAGTATTATAGATTTTATTGGTG
TGTAATGTATATATTGTTTATTTTTTTATATTATTTAAATATATGGAATT
GTATAGTTATTTAATGTTTAATAAAGGTATATGGTATATATTAAAATAGA
GAAAAAAGAGTATGTTTTTTGTATATAAGAGATGAAATAAAAAAAATAGA
TAAGGTGGTGACGTGTATAGTGTTTTATTATAATTGAGTTGTAAGAGTAG
GT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTGCAAAATTTGCCTTTACTTTTTT
TTTAGCTTCAAGCATAATGACTCAAAAACTCCAAACAGAAGCAGAGAACT
AGATCTCAAGTTTACACCAGTGTACTGATTTTTTGTTGTTATTGTTGTTA
CTATCGTTTGTTTTTCAAGACAGGTTTTCTCTATGTAGGCCTGGATATCC
TGGAAATCACTCTGGTAGACCAGGCTAGCATTGAACTCACAGATATCTTA
CTGAGTGTGCCTCCTAAGAGCTTTTATTAAAGGTGTATGCCATCAATGCC
CACCCTGAATTTTTGTTTANNATTCCAAAACAAGCCCCTTTATTTAGGTA
TTTTCTTCATTTACATCCCCCACGCTATAAAAAAAAAAAATACCATACCC
TCCCCCCTACTCCCCTACCCACCCACTCCGAATTTTTGGCCCTGGCATTC
CCTTTATACTGAGGCATATAAAGTTTGCAAGACCAATGGGCCTCTCTTTC
CAATGATGGTCAACTAGGCCAACATCTGATACATATGCCTCTAGAGGGAC
AAGCTCCTGGGGTACTGGTTATTTGCTTATTGTTTATTCCCTTTAAAGGG
TTTGAGAATCCCTTTAACTCCTTGGGTACTTTCCCTAAGATCTCCACTGG
GTAGCCCTCTGTACCATCTCATTTGCTGATTGTTGACATCTACTTCAGTG
GTTCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_c07.g1 MSMg01no265_c07.g1 CHROMAT_FILE:
MSMg01no265_c07.g1 PHD_FILE: MSMg01no265_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:33 2005
         (288 letters)



>mm_chr13_17703024_17703709
          Length = 686

 Score =  387 bits (200), Expect = e-112
 Identities = 271/310 (87%), Gaps = 25/310 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgcaaaatttgcctttactttttttttagcttcaagcataatgactcaaaaactccaa 60
           ||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||
Sbjct: 201 attgcaaaatttgcctttac---ttttttagcttaaagcataatgactcaaaaactccaa 257

                                                                       
Query: 61  acagaagcagagaactagatctcaagtttacaccagtgtactgatttt------------ 108
           ||||||||||||||||||||||||||| ||||||||||||||||||||            
Sbjct: 258 acagaagcagagaactagatctcaagtgtacaccagtgtactgattttgttgttgttgtt 317

                                                                       
Query: 109 ----------ttgttgttattgttgttactatcgtttgtttttcaagacaggttttctct 158
                     |||||||| ||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 318 gttgttgttgttgttgttgttgttgttactgtcgtttgtttttcaagacagggtttctct 377

                                                                       
Query: 159 atgtaggcctggatatcctggaaatcactctggtagaccaggctagcattgaactcacag 218
           ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 378 atgtaggtctggatatcctggaactcactctggtagaccaggctagccttgaactcacag 437

                                                                       
Query: 219 atatcttactgagtgtgcctcctaagagcttttattaaaggtgtatgccatcaatgccca 278
           | ||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 438 agatcctactgagtgtgcctcctaagagctgggattaaaggtgtatgccatcaatgccca 497

                     
Query: 279 ccctgaattt 288
            |||||||||
Sbjct: 498 gcctgaattt 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 686
Length adjustment: 9
Effective length of query: 279
Effective length of database: 677
Effective search space:   188883
Effective search space used:   188883
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)