BAC Information

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BAC

Clone NameMSMg01-265L07
Chromosome13 (Build37)
Map Location 82,627,103 - 82,627,391
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3, LOC238756
Downstream geneLOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265L07.T7 (MSMg01no265_l07.b1)MSMg01-265L07.TJ (MSMg01no265_l07.g1)
ACCAG406895AG406896
length768762
length of high quality
(start - end)
109 (38 - 146)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no265_l07.b1 PHD_FILE: MSMg01no265_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:17 2005CHROMAT_FILE: MSMg01no265_l07.g1 PHD_FILE: MSMg01no265_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
TCTGTTTANTTCTATATCCATTTTTGATTGGGTTGTTTTATACTTTGGNG
GTTAGCTTCTTGAGTTCTTTATATATTTTGNATAGTAACCCTGGTATTGN
ATGTGNNNATAGTGAATATTTTTCCCCATCTGTNTTTGCCATTTGTCCTA
TTGACTCTGTCCTTTGCCTTTCNNANCTTTCCCCTTTCTTGNGTTCCCCT
TTGTTTNTTCCTTTTCTTTTNNCCTGTNCTTCCTTNNNNTTCTTTTTTNN
NAATTTTCCCCCTGTTTTTTTTNNNTTTTGAAGTTTCTTTCCCCCCTTTT
TCCTCCTTTTTTTTTTTTTTTTTCCCCCNNNNCTTNNTCCTTTTTTTTTN
NNCCTTTTTTTTTTTTTCCCTNTATTTTTCCCCACCCCTCTCTTTTTTTT
TAAATACAAACACTTTCTTCCCTTTTGTCTCTCCTCTTTTTTTTTTTCCT
TTCCTTTTTTATTACACTTAAAAGCGGGGGTTCTTTCTCCTCTTTTTTTT
TTTCTCTTCTTTCTCCTCTTAAATTTTTTTTTTTTTTTTTCCTCTCCCTC
TTTTTTTCTTTCCCTTTCTCTTTTTCCTTTCTTTCTCTATTCCTTTTTTT
TCTTTTTTCCCTCTCCCCTCTTCTCTTAATCAACAAGAAGAAAAGCGAGC
NNNNTTTTTTTTGTTCATGGGNCGCAGTTNTGTTGTGTGTTTTTTTTCAA
AAAAAAAAGGACGGATGA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGGCATTGGACACTTGAGTTT
GAAATCAAATGAGGCATACACATAAATAGTCAGGCAATGAGAAGTAAATT
TTTAATGAGAAGTATTTTTAATACTAATAGCCATCTTTGAGAATAAGGTT
TAAGCATTTAATATATAATGAACATTAGGCAGACTGAATCCTCTATCCAG
TCTGTCAACCCAGAAGCTTCACAGAAGACCAAGGTTGTTCCCCAAAAGAA
AACTTCTTATAGGTGGACATTAACCTGACCCTGTGCAAAATCAGGCTGAA
TGCTAATAGAGGAGATTAATTGATTTACCTANACTTACTCATCTCTGTCC
CCAAACACGTTATCCAGAAATGCGGTTTGCTCTATAGAATATAAAGTCTC
ATCAAGCCCAGTCTAAGAGAGTTTTCCTGTGTGGCTTTGGGAGATCCAAG
AGTCTATATTTTATTTTGGCTGCAGTCCTCTCTGATGCTTGTAGGATGTA
CAATGAATGCCACATTACAAGAAAAGAGAAGTGAACAGAAGTACAAAGCA
GTATTCTTAACACCCATTAACAGGGCATCCTTCAGTGCTTTCTCTTTGTG
GCCCATAACCCGGTTGAACAAATTTTAATCCCTTGCCTTTAGCCCTTGGG
AGAACAAATGACATTGACCCTAGGTTTCCTTTCTGCCTAACTAAATATTA
TAAACTTGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_l07.g1 MSMg01no265_l07.g1 CHROMAT_FILE:
MSMg01no265_l07.g1 PHD_FILE: MSMg01no265_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:17 2005
         (291 letters)



>mm_chr13_82626903_82627593
          Length = 691

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaggcattggacacttgagtttgaaatcaaatgaggcatacacataaatagtcaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaggcattggacacttgagtttgaaatcaaatgaggcatacacataaatagtcaggca 260

                                                                       
Query: 61  atgagaagtaaatttttaatgagaagtatttttaatactaatagccatctttgagaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgagaagtaaatttttaatgagaagtatttttaatactaatagccatctttgagaataa 320

                                                                       
Query: 121 ggtttaagcatttaatatataatgaacattaggcagactgaatcctctatccagtctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtttaagcatttaatatataatgaacattaggcagactgaatcctctatccagtctgtc 380

                                                                       
Query: 181 aacccagaagcttcacagaagaccaaggttgttccccaaaagaaaacttcttataggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacccagaagcttcacagaagaccaaggttgttccccaaaagaaaacttcttataggtgg 440

                                                            
Query: 241 acattaacctgaccctgtgcaaaatcaggctgaatgctaatagaggaga 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattaacctgaccctgtgcaaaatcaggctgaatgctaatagaggaga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)